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Sesión Practica 3- Micología :ESTUDIO MACROSCÓPICO Y MICROSCÓPICO DE HONGOS AMBIENTALES Y LEVADURAS — Transcript

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  1. 0:00You can see it, everyone.
  2. 0:06Yes,
  3. 0:08yes, yes. Ready? Okay. So, look, today
  4. 0:12we are going to perform the macroscopic
  5. 0:14and microscopic identification of
  6. 0:16environmental fungi and yeasts, right?
  7. 0:19If last week we saw how we can perform
  8. 0:21isolation, which can be done on
  9. 0:23different media, right? since they were
  10. 0:27placed in incubation at room
  11. 0:29temperature for 3 to 5 days, or
  12. 0:31depending, since these are
  13. 0:32environmental fungi, for 3 to 5 days,
  14. 0:35we are also going to see in this case
  15. 0:37that we will observe fungi and yeasts
  16. 0:39on these plates, right? We already said
  17. 0:43that fungi have a different appearance
  18. 0:45than yeasts; yeasts look a lot like
  19. 0:47bacteria in this case, right? So, the
  20. 0:51objective of this lab is to perform a
  21. 0:53macroscopic and microscopic study of
  22. 0:55molds and yeasts for their
  23. 0:57identification. As a specific objective
  24. 1:03, we are going to see that you will
  25. 1:05apply inoculation techniques on culture
  26. 1:07media for the growth of these fungi,
  27. 1:09right? How do we...let's see, back
  28. 1:15again. So, apply inoculation techniques
  29. 1:18on culture media for the growth of the
  30. 1:20fungi, right? And therefore, we are
  31. 1:22going to describe the macroscopic and
  32. 1:24microscopic characteristics of
  33. 1:26filamentous fungi and yeasts. Why?
  34. 1:28Because in this case, they have certain
  35. 1:30characteristics, right? Just as we saw
  36. 1:34with bacteria, they were round, lobate,
  37. 1:36rhizoid; we also have to describe both
  38. 1:39the molds and yeasts, right? So, we
  39. 1:42must also differentiate the macroscopic
  40. 1:45and microscopic characteristics of
  41. 1:47filamentous fungi and yeasts, right?
  42. 1:49Because while it is true that we can
  43. 1:51differentiate them macroscopically, we
  44. 1:53can also make the distinction
  45. 1:55microscopically in this case, right?
  46. 1:59And apply study techniques for the
  47. 2:01microscopic examination of fungi,
  48. 2:02because there are different types of
  49. 2:04ways or techniques we can use to
  50. 2:06identify them, right? And among these
  51. 2:10techniques, the microculture technique
  52. 2:12is used for the microscopic study of
  53. 2:14fungi. Therefore, the competency to
  54. 2:16develop is to identify fungi according
  55. 2:18to the macroscopic and microscopic
  56. 2:20characteristics of the fungi, following
  57. 2:23established procedures, right? So,
  58. 2:27regarding the identification part, we
  59. 2:29are going to do it in the case of
  60. 2:31Guaroto, but Guaroto isn't here. And
  61. 2:35why are you joining? Wait a second. I'm
  62. 2:37going to stop sharing because I'm...I'm
  63. 2:39getting in there. Guaroto, where is
  64. 2:41Guaroto? Guaroto, aren't you from this
  65. 2:44...from this group? I mean, you are,
  66. 2:46let's see, Piero Alexandro Guaroto,
  67. 2:51please, leave the leave the room, leave
  68. 2:58the room, Piero. Okay,
  69. 3:00professor, excuse me, my classmate
  70. 3:02Aparc, Aparcana just entered. Yes, okay
  71. 3:05. Now yes, Aparcana. Yes, it's just
  72. 3:07that I thought, uh, he is working and
  73. 3:09Guaroto entered, and I accepted him and
  74. 3:11I didn't see the other one. Yes. Okay,
  75. 3:13now he is in. But you are arriving late
  76. 3:16, Marañón. Ah,
  77. 3:18professor, excuse me, I am trying to
  78. 3:20enter, but my internet is a bit poor. I
  79. 3:23don't know if you can count me in the
  80. 3:24attendance. It is the first time that I
  81. 3:26am going to miss
  82. 3:26attendance. I will let you in, but you
  83. 3:28will be marked late. That that always
  84. 3:31goes to your to your to your to your
  85. 3:32grade that
  86. 3:35yes.
  87. 3:36Yes, yes,
  88. 3:37yes. I am marking you as present. I am
  89. 3:39marking you as present, but I am
  90. 3:41telling you that those are tardies. The
  91. 3:43tardies.
  92. 3:43No, you are not marking me as absent.
  93. 3:45No, I am not marking you as absent.
  94. 3:48Okay, okay. Okay. So, we are going to
  95. 3:54look at the identification in this case
  96. 3:56of fungi, which is studied through
  97. 3:58macroscopic study, right? When I am
  98. 4:01talking about fungal identification, in
  99. 4:03this case I am I am uh referring to
  100. 4:05molds, to those that are filamentous,
  101. 4:07right? So, what is it that has to be
  102. 4:10studied here? The shape and size of the
  103. 4:14mold, color of the surface and the
  104. 4:16reverse as well, because, I mean, we
  105. 4:18are not just going to study the
  106. 4:20characteristics I am seeing, I have to
  107. 4:22turn the plate and then I have to study
  108. 4:24the reverse. Why? Because it happens
  109. 4:29sometimes that on the obverse, as we
  110. 4:31call it, when I am looking at it, I can
  111. 4:33see a uh a granular surface of black
  112. 4:35color, but I turn the plate over and I
  113. 4:37will see in this case a white or yellow
  114. 4:40color, right? Another color, it could
  115. 4:43be red too, right? Or different types
  116. 4:45of colors. So, those characteristics
  117. 4:48that we have to put down, we have to
  118. 4:50note them because according to the
  119. 4:52taxonomic keys that is what is being
  120. 4:54asked of us, right? We can also see if
  121. 4:58the fungus has the capacity to diffuse
  122. 5:00the pigment, right? Which means that
  123. 5:02the fungus has this characteristic of
  124. 5:04presenting these secondary metabolites
  125. 5:06that I told you about yesterday, but by
  126. 5:08by producing these secondary
  127. 5:10metabolites it will produce a pigment
  128. 5:12that will diffuse into the medium.
  129. 5:13Therefore, sometimes we can see in this
  130. 5:16case that the medium turns somewhat
  131. 5:18brownish, yellowish, or reddish. So,
  132. 5:20this means it has the ability to
  133. 5:22produce, in this case, pigments, right?
  134. 5:26Regarding the texture, in this case,
  135. 5:28you have to observe if it is chalky,
  136. 5:30looking like plaster, like soil, right?
  137. 5:33Like a little bit of soil, like some
  138. 5:34dust that has been added there. It
  139. 5:36seems like they are little granules,
  140. 5:38right? Sometimes they look like, uh,
  141. 5:40little granules like pepper, right?
  142. 5:42Sometimes we can see that they present
  143. 5:44fine hairs or otherwise it looks like
  144. 5:46wool, usually coiled, right? Sometimes
  145. 5:48they can also be creamy or velvety. In
  146. 5:51this case, we also have to see, in this
  147. 5:53case, if we observe the plate, right?
  148. 5:57And we look at it with the naked eye,
  149. 5:59we can see if that colony is raised or
  150. 6:02if the colony is completely flat, or
  151. 6:04perhaps it only has a central elevation
  152. 6:06. Do you remember that we, uh, also
  153. 6:10worked on that part with bacteria,
  154. 6:12right? So, here it is very similar, it
  155. 6:15is studied, except that in this case we
  156. 6:17have to, uh, see the type of fungus,
  157. 6:19right? And also, in this case, apart
  158. 6:22from the texture we can see, the fungus
  159. 6:25has aspects it can present. If you
  160. 6:27observe and if you have seen this type
  161. 6:29of fungus, sometimes you can say, you
  162. 6:31can see the colony is somewhat rounded,
  163. 6:33which will form some small folds, right
  164. 6:36? Or otherwise they will form, in this
  165. 6:39case, like circumferences, right? Or it
  166. 6:42could be that in this case there are
  167. 6:44elevations and depressions, which looks
  168. 6:46cerebriform like a brain, or it could
  169. 6:48be crateriform when there is an
  170. 6:50elevation in the center, right? As for
  171. 6:55the consistency, we cannot determine
  172. 6:57that just by observation. In this case,
  173. 7:01we have to use a mycological loop to
  174. 7:03touch the colony to see if it is hard,
  175. 7:05soft, if it is firm, or if it comes off
  176. 7:08like a thin membrane, right? Why?
  177. 7:10Because we do have to check the type of
  178. 7:12consistency, right? Sometimes there are
  179. 7:17even fungi that are so hard that, for
  180. 7:19us to observe them, we have to make a
  181. 7:21small cut and place it on the slides
  182. 7:22for us to see, because it is very stuck
  183. 7:25to the culture medium in this case.
  184. 7:29Apart from that, it is also important
  185. 7:31in the macroscopic study that during
  186. 7:33the time you carry out the incubation,
  187. 7:35you have to see, uh, how it has grown,
  188. 7:38right? Sometimes by the third day you
  189. 7:41will see it completely filling the
  190. 7:42plate, right? Sometimes Rhizopus muor
  191. 7:46has that property of immediately
  192. 7:48filling the plate, but there are others
  193. 7:50that you will see on the fifth day and
  194. 7:52you will see the colony is still very
  195. 7:54small, right? So, these are the
  196. 7:57macroscopic studies that can be
  197. 7:59performed, right? So, here you can see
  198. 8:02the surface. I was telling you that you
  199. 8:05have to work on the color of the
  200. 8:07surface and the reverse, right? Here we
  201. 8:09are seeing the obverse, right? It is
  202. 8:11the surface, as you can see, right?
  203. 8:13Here we are going to see it somewhat
  204. 8:15powdery, right? Here in this case as
  205. 8:18well, look, somewhat velvety, right?
  206. 8:21Here, somewhat creamy. You will see
  207. 8:23this one here, for instance, it can be
  208. 8:25hairy, as you see it, like a type of
  209. 8:28hair, right? And apart from that, you
  210. 8:32can also see its appearance in this
  211. 8:33case sometimes. Look here, a fold is
  212. 8:37formed here. Here there is a central
  213. 8:40uplift. If you observe here, look, it
  214. 8:43is forming circles, right? Look, this
  215. 8:46is like a brain type. So, first the
  216. 8:49color, later we will see the other, but
  217. 8:51I am telling you that you can also
  218. 8:53observe all that part there, right? So,
  219. 8:56this is an example of how we are going
  220. 8:58to see the obverse and the reverse,
  221. 9:00right? If you observe here on the
  222. 9:02obverse, you will see what color, sort
  223. 9:05of white, right? But if you flip it
  224. 9:07over, generally, what will we see?
  225. 9:09Actually, sort of yellowish, right? So,
  226. 9:13that is what you have to do to study
  227. 9:15first, the macroscopic characteristics
  228. 9:17of the colony, right? I told you that
  229. 9:20it has the capacity to produce pigment.
  230. 9:22Look at the sort of orange pigment it
  231. 9:24shows here. Here also somewhat red, if
  232. 9:26you see, look, pink that they might be
  233. 9:29giving, that is to say, the fungus has
  234. 9:31the capacity to diffuse in this case
  235. 9:33the type of pigment, right? And this is
  236. 9:37a secondary metabolite that they are
  237. 9:39going to diffuse. I even told you that
  238. 9:42this diffusion of pigment, which I
  239. 9:44forgot to mention yesterday in the
  240. 9:46metabolism part, nowadays these
  241. 9:48pigments are being used as dyes, right?
  242. 9:51At a student congress, a project we did
  243. 9:53with the students took second place,
  244. 9:55right? Right in the course, right?
  245. 9:58Where they isolated fungi, fungi, and
  246. 10:00saw fungi that had the capacity to
  247. 10:02produce pigment. So, these fungi that
  248. 10:05produced pigments, in this case, what
  249. 10:07they have done is extract the pigment
  250. 10:09from these types of fungi and they dyed
  251. 10:12, in this case, some cotton, right? And
  252. 10:15so nowadays, it is also being used in
  253. 10:17the industrial sector to obtain
  254. 10:19pigments. These would be natural
  255. 10:22pigments, right? What was missing in
  256. 10:24the work is simply, why? Because every
  257. 10:26time one can extract a metabolite, in
  258. 10:28this case a secondary one, one must
  259. 10:30check for toxicity, right? Because
  260. 10:32sometimes it can also be toxic, right?
  261. 10:34So we have to look at that part. But
  262. 10:36the importance of the pigment is also
  263. 10:38an important factor, right? There we
  264. 10:41can see the texture, which can be
  265. 10:43chalky, it can be earthy, it can be
  266. 10:45granular, right? They look like little
  267. 10:47granules, right? Hairy, woolly, creamy,
  268. 10:50velvety. meaning that we have to look
  269. 10:53at what texture it has in this case,
  270. 10:54right? And these are the aspects I was
  271. 10:58telling you about, that if you are
  272. 11:00going to see, look, they can produce a
  273. 11:02folded aspect. And here, highlight in
  274. 11:05this case that when one sees the color,
  275. 11:07one cannot only see a single color, but
  276. 11:09can see several colors. And so you also
  277. 11:12have to describe it, right? As an
  278. 11:15example of this colony, you can see
  279. 11:17that the color is generally orange in
  280. 11:19the central part, around this color, in
  281. 11:21this case it will be green, and it ends
  282. 11:23, in this case, with a cream border,
  283. 11:25right? So that is what you have to do
  284. 11:28in this case according to the color, in
  285. 11:30the case of the aspect you are going to
  286. 11:32see that they form folds, it is folded.
  287. 11:34Look, here yes, here also, here you are
  288. 11:36going to see that they have three
  289. 11:38colors. Look, even four, one here
  290. 11:40darker, one lighter, a dark green, and
  291. 11:43here around it also a border, right?
  292. 11:46And the aspect in this case is radiated
  293. 11:48. Look, apart from the fact that they
  294. 11:51can be mixtures of two, in this case it
  295. 11:53is radiated, but also folds, not folds
  296. 11:55very close together like this one here,
  297. 11:57but slightly open folds, but generally
  298. 11:59the radiated aspect. Look how it is
  299. 12:01forming the circumferences, right? This
  300. 12:04one here you can see a cerebriform
  301. 12:06aspect. This one is also folded, but in
  302. 12:09this one it is not cerebriform, but it
  303. 12:12is like a crater, right? Look, here you
  304. 12:15can also observe this one has a central
  305. 12:17elevation. Look, flat here around, but
  306. 12:19it has a central elevation. And besides
  307. 12:22that, it’s also important, look, this
  308. 12:24one is folded, right? This one is also
  309. 12:27folded in this case, but look here,
  310. 12:29there are some oily spots, right? There
  311. 12:32are certain types of fungi that have
  312. 12:34these exudates, and this must also be
  313. 12:36noted: they present certain types of
  314. 12:38exudates that can be yellow, can be
  315. 12:40white, can be pink, which look like
  316. 12:42little droplets that you have created,
  317. 12:44oil droplets that are dispersed, mainly
  318. 12:46the type of, and the surface, as you
  319. 12:51can see, look, is raised, this one is
  320. 12:53flat, this one has a central elevation,
  321. 12:55and this one has a generally total
  322. 12:57elevation, right? Everything is raised
  323. 12:59in this case. Now, once we perform the
  324. 13:03macroscopic study, we must perform the
  325. 13:06microscopic study, right? So, I have
  326. 13:09already done the study, so for the
  327. 13:11microscopic study, what do I have to do
  328. 13:13? So, I am going to take my sample and
  329. 13:16for the microscopic study, I have to
  330. 13:18make use, in this case, of the
  331. 13:20microscope, right? So there, in the
  332. 13:23microscopic study, I have to see, this
  333. 13:26is done with—uh, there are two
  334. 13:28techniques—that is, the wet mount,
  335. 13:30right? Or the Scotch tape technique,
  336. 13:33right? Or we will see the microculture
  337. 13:36technique. And that will allow us to
  338. 13:40observe, in this case, what—and
  339. 13:42sometimes we will have to stain with
  340. 13:44lactophenol blue. And so, once we make
  341. 13:47this preparation, which I will explain
  342. 13:50to you later, we will see the type of
  343. 13:52hyphae, and that is why we did the
  344. 13:53theoretical part, right? In the
  345. 13:56theoretical part, we said that fungi
  346. 13:59can be septate or coenocytic or
  347. 14:00aseptate, right? So you have to note,
  348. 14:05you have to look through the microscope
  349. 14:07, you have to see the type of hypha to
  350. 14:09see if it presents septa or does not
  351. 14:10present septa. What else should you
  352. 14:14have there? hyphal modifications and
  353. 14:20the hyphal modifications that we said
  354. 14:22we can see if, in modifications, they
  355. 14:25generally form chlamydospores, they
  356. 14:27will—they will form a rhizomorph,
  357. 14:29right? This is what we are going to
  358. 14:32have to see, if it will form a rhizoid,
  359. 14:34right? So we have to see if the fungus
  360. 14:37presents hyphal modifications or not,
  361. 14:39or nodular forms as I told you there,
  362. 14:41right? Now, apart from that, one can
  363. 14:44observe the type of mycelium. The type
  364. 14:46of mycelium, you see if it is
  365. 14:48transparent or if it is dematiaceous,
  366. 14:50right? We have already said that there
  367. 14:53are fungi that won't have the capacity
  368. 14:55to produce or display these dark
  369. 14:56pigments, and therefore the mycelium
  370. 14:58will be transparent. That is why
  371. 15:02lactophenol blue is used to be able to
  372. 15:04observe this much better, right? And
  373. 15:06the dematiaceous ones are generally
  374. 15:08dark, to the point that sometimes even
  375. 15:10lactophenol blue doesn't stain them,
  376. 15:12right? But we will see them as dark,
  377. 15:14right? In the case of Alternaria, for
  378. 15:16example, we will see that it is a dark
  379. 15:18mycelium. What else can we do in the
  380. 15:20microscopic study? Type of spores.
  381. 15:23Whether it presents sexual spores or
  382. 15:25asexual spores, right? We still need to
  383. 15:29look at reproduction in this case, and
  384. 15:31you are mainly going to learn to
  385. 15:33recognize if they are sexual or asexual
  386. 15:35spores. What else should we look at?
  387. 15:38And this is very important, right? Here
  388. 15:41regarding the aspect of the
  389. 15:42sporangiophore or conidiophore. Fungi,
  390. 15:47as I was telling you, have a vegetative
  391. 15:49mycelium that enters the substrate to
  392. 15:51feed, but there is a mycelium that
  393. 15:53emerges, which is the aerial one, and
  394. 15:55there we will have the reproductive
  395. 15:57structures, and therefore, in those
  396. 15:59reproductive structures, a sporophore
  397. 16:01will be produced. This sporophore can
  398. 16:06be a sporangiophore or it can be a
  399. 16:08conidiophore. When do we call it a
  400. 16:11sporangiophore? When this mycelium—
  401. 16:15and that's why there is a
  402. 16:17differentiation here—usually the
  403. 16:19hypha emerges and forms a vesicle, and
  404. 16:21inside that vesicle, we will have
  405. 16:23spores. That type of sporophore is
  406. 16:29called a sporangiophore. And when we
  407. 16:34talk about a conidiophore, this hypha
  408. 16:36no longer makes that differentiation,
  409. 16:38it doesn't form that rounded shape that
  410. 16:41we will observe; instead, the conidia
  411. 16:43will emerge not enclosed, but
  412. 16:44externally. And those conidiophores
  413. 16:48will also adopt different types of
  414. 16:49shapes depending on how the spores are
  415. 16:51generally grouped, right? And so we
  416. 16:53will have sporangiophores or
  417. 16:55conidiophores. And this is an important
  418. 16:57factor because in taxonomic keys, if
  419. 16:59you look at an Aspergillus, you see it
  420. 17:02looks a bit rounded, and we will see
  421. 17:04there are phialides with little spores
  422. 17:06that look like a sun, it seems. That is
  423. 17:09a conidiophore; the spores are external
  424. 17:11. But if you observe, let's say, Mucor,
  425. 17:14you will generally see a vesicle that
  426. 17:17encloses them, and inside those
  427. 17:19vesicles are, in this case, the spores,
  428. 17:21right? That is in the drawings in the
  429. 17:24taxonomic keys. That is why fungal
  430. 17:27taxonomic keys allow us to perform
  431. 17:29identification based on these aspects
  432. 17:31that fungi produce. Why? Because if you
  433. 17:36only look at the type of hyphae, you
  434. 17:37won't be able to identify the fungus
  435. 17:39for me. If you see hyphal modifications
  436. 17:43, well, possibly if you find a rhizoid,
  437. 17:45you can say, "Ah, it could be a
  438. 17:47Rhizopus or maybe a Rhizomucor, right?"
  439. 17:51If you only see that it is transparent
  440. 17:53or dematiaceous, you can't tell me what
  441. 17:56it is. If it is the type of sexual
  442. 17:59spores, many fungi will present the
  443. 18:01same sexual spores or the same asexual
  444. 18:04spores that are very similar, right?
  445. 18:06Although, well, with sexual spores we
  446. 18:09can in this case tell the difference,
  447. 18:11right? Because there are ascospores,
  448. 18:13zygospores, but it doesn't identify it
  449. 18:14for me. I can say it is an ascospore,
  450. 18:17but I cannot say which fungus it is. No
  451. 18:19, I can say it is a zygospore, but I
  452. 18:21cannot say which fungus it is. But this
  453. 18:24aspect of the sporangiophore can give
  454. 18:26me, therefore, an idea of the genus,
  455. 18:28right? An indication of the genus. I
  456. 18:30can say, this is a Mucor, or this is a
  457. 18:33Rhizopus, this is a Rhizomucor. I can
  458. 18:36suddenly say this is a Penicillium,
  459. 18:38right? This is a Fusarium, right? This
  460. 18:41is an Alternaria because of the
  461. 18:42characteristics of the conidiophore
  462. 18:44that I will see, right? But it is also
  463. 18:46important to look at the aspect and
  464. 18:47size of the conidia. The aspect and
  465. 18:50size will allow me, if I already see
  466. 18:52the sporangiophore or conidiophore, the
  467. 18:54aspect and size of the conidia can give
  468. 18:56me an index of what species it might be
  469. 18:59. Why? Because conidia can generally be
  470. 19:02different, right? One could say there
  471. 19:05are Aspergilli whose conidia can be
  472. 19:07small and round, smooth, and others
  473. 19:09that will be somewhat spiky. So that
  474. 19:11will be in the taxonomic keys as well,
  475. 19:13they will tell you Aspergillus
  476. 19:15such-and-such will present this, right?
  477. 19:19And we will see if they present
  478. 19:21specialized structures, right? If they
  479. 19:27are going to produce, in this case, the
  480. 19:29types of perithecia or apothecia, we
  481. 19:31will see that in the microscopic study,
  482. 19:33right? So, what do we have to look at?
  483. 19:38Type of hypha. Yes, we have already
  484. 19:40said, this is a septate hypha. And this
  485. 19:42is a coenocytic or non-septate hypha,
  486. 19:44right? If you look here through the
  487. 19:47microscope, I am only seeing hyphae,
  488. 19:49right? And so I am going to see the
  489. 19:51septa, right? So I can observe that
  490. 19:53this one has a septum. If I look at
  491. 19:55this part here, I will see that it
  492. 19:57doesn't have septa, right? Even though
  493. 19:58it appears to have septa here, right?
  494. 20:00Actually, a hypha has just crossed over
  495. 20:02here, right? But this is a coenocytic
  496. 20:04hypha; it does not present the septum
  497. 20:06that in this case generally separates,
  498. 20:09like, a compartment. Not here; here it
  499. 20:12is completely, in this case, without
  500. 20:14circulation. Generally, the cytoplasm
  501. 20:18circulates completely, right? If we
  502. 20:20look at the type of mycelium, we are
  503. 20:22going to have a hyaline type of
  504. 20:24mycelium. You can even see here if the
  505. 20:26type of mycelium is microsiphonous or
  506. 20:28macrosiphonous, right? The
  507. 20:29microsiphonous one is thin, whereas the
  508. 20:32macrosiphonous one is wide, right? For
  509. 20:34example, this is a microsiphonous
  510. 20:35mycelium and this is a macrosiphonous
  511. 20:37one, but in terms of color, this one is
  512. 20:39generally transparent and this one is
  513. 20:40dematiaceous. Look at me, you see it is
  514. 20:42dark; even here it is no longer
  515. 20:44necessary. Well, it is not stained here
  516. 20:46, but here you will see that none of
  517. 20:48these are stained; they are directly
  518. 20:50like this so you can differentiate that
  519. 20:52this is generally transparent. Look,
  520. 20:54even the spores themselves that you can
  521. 20:56see. On the other hand, you put this
  522. 20:58here and you can already tell mainly
  523. 21:00what it is; sometimes staining is not
  524. 21:02necessary, right? However, the
  525. 21:03techniques and procedures tell us that
  526. 21:05we have to stain with lactophenol blue,
  527. 21:07right? Look, and here you are going to
  528. 21:09observe, right? You will even see that
  529. 21:12the septate mycelium they form with
  530. 21:14this is—this is a conidiophore, but
  531. 21:16the conidiophore, let's see, look at
  532. 21:18how the spores come out in this case,
  533. 21:20right? That is what we have to look at.
  534. 21:23So, we have to look at the types of
  535. 21:25sexual and asexual structures. If you
  536. 21:27observe here, there are different types
  537. 21:29of structures that produce sexual
  538. 21:31spores. The first three that you are
  539. 21:34going to see here, which you see here,
  540. 21:36are sporangiophores, right? And the
  541. 21:38others, and these here, are
  542. 21:40conidiophores. Look at this one here,
  543. 21:42where is the spore? Internally. Here,
  544. 21:45also internally. Here, internally,
  545. 21:47right? But here, the spores are
  546. 21:49generally on the external part. And you
  547. 21:51will see that these sporangiophores are
  548. 21:53also different, they are also different
  549. 21:55. There are some elongated ones, some
  550. 21:57rounded ones, but we have to look at
  551. 21:58that. But here you can differentiate.
  552. 22:01This is a sporangiophore and this is a
  553. 22:03conidiophore. These are the ones that
  554. 22:06will produce asexual spores, right? And
  555. 22:08the sexual spores here are also
  556. 22:10unicellular, they can be multicellular
  557. 22:12depending on the fungus and the
  558. 22:14taxonomy. If we look at the bottom part
  559. 22:17, they are actually sexual spores,
  560. 22:19right? In this case, it is an oogonium,
  561. 22:23this is a zoospore, right? This is an
  562. 22:26oogonium that you will see will form
  563. 22:28its spore here. Here this is an
  564. 22:31aeciospore, this is a basidiospore.
  565. 22:34Look here that they are—sorry, this
  566. 22:36is an ascospore that is inside an ascus
  567. 22:38and here we will see the ascospores
  568. 22:40that are internal and this is a
  569. 22:42basidiospore that are external, right?
  570. 22:45This is the basidiospore, right? And
  571. 22:47here in this case it is born from a
  572. 22:49basidium, right? So there we can, in
  573. 22:52this case, determine. So there we have,
  574. 22:55look, the different types of structures
  575. 22:57that we can observe, right? If I ask
  576. 23:00you there, are these conidiophores or
  577. 23:02sporangiophores? Hm. What do you think
  578. 23:08there? Are there internal spores or are
  579. 23:12there external spores? And there are
  580. 23:17also
  581. 23:19I can't hear you. Sure. Let's see, a
  582. 23:22bit slower so I can hear you. Well, I
  583. 23:25observe external and internal ones. It
  584. 23:28is also observed.
  585. 23:29Let's see, which one would be internal?
  586. 23:31The one here, the one here, the one
  587. 23:33here. Let's see, 1, 2, 3. Is it in the
  588. 23:36first row or in the second row that is
  589. 23:37internal? Let's see,
  590. 23:38in the second row there is an internal
  591. 23:40one and in the middle of the first row
  592. 23:42is the internal one. There are also
  593. 23:44four internal ones.
  594. 23:45It is internal, this is one, two, three
  595. 23:48, four. No, if you observe there, they
  596. 23:50are all spores. They are all spores,
  597. 23:53look. Ah, they are spores and they are
  598. 23:56external spores. Let's see here. Let's
  599. 23:59let's change here. Look, this is a—
  600. 24:03here these are spores. Apparently it
  601. 24:06seems like there is something inside,
  602. 24:08right? But these are macroconidia. It
  603. 24:12is a macroconidium that has this
  604. 24:14elongated shape, but it is in clusters.
  605. 24:17This is also a macroconidium and this
  606. 24:19that you observe here is the
  607. 24:21conidiophore. Look, it's the
  608. 24:23conidiophore. From this conidiophore
  609. 24:26one, two, three conidia will emerge and
  610. 24:28these are macroconidia. This is the
  611. 24:31same, it's a macroconidium. That is,
  612. 24:34each one of these that forms a cluster
  613. 24:36is a macroconidium. This is from
  614. 24:37Fusarium, for instance, right? This is
  615. 24:40a macroconidium too. Look,
  616. 24:41macroconidium. Which one is the
  617. 24:43microconidium? This one here, these
  618. 24:45little dots. This fungus, for example,
  619. 24:47presents—there are fungi that present
  620. 24:49macroconidia and microconidia. This one
  621. 24:52here is also microconidia and this is
  622. 24:54the sporophore, the conidiophore, the
  623. 24:56conidiophore itself. So, this
  624. 24:59characteristic that you have to look
  625. 25:01for is important for genus
  626. 25:02identification. I’ve shown you this
  627. 25:06here so you can see that these are
  628. 25:07asexual spores. Asexual spores can be
  629. 25:11microconidia, or they can be
  630. 25:13macroconidia. In this case, there are
  631. 25:15fungi that will present both micro and
  632. 25:17macroconidia. There are others that
  633. 25:19only present macroconidia and sometimes
  634. 25:21don’t present microconidia, right? So
  635. 25:24I also have those characteristics. But
  636. 25:26these are asexual spores, right? And
  637. 25:29these are sexual spores. I was telling
  638. 25:32you that fungi can produce ascospores.
  639. 25:34So, if you look here, this is an ascus
  640. 25:36and inside this ascus we will have the
  641. 25:38ascospores, right? So these are asci.
  642. 25:41If you look here, look, asci. And
  643. 25:43inside here you will see the ascospores
  644. 25:45. This is sexual reproduction. The
  645. 25:50basidiospore also has a basidium here
  646. 25:52and its sterigmata, and inside these
  647. 25:54sterigmata you will see the
  648. 25:55basidiospores coming out. This is a
  649. 25:58sexual spore. Here I will also observe
  650. 26:01it. Look at the basidium here and the
  651. 26:03sterigmata are here, and here are the
  652. 26:05basidiospores. This quantity of spores,
  653. 26:07how the basidium type is formed, also
  654. 26:10helps me in species identification,
  655. 26:12right? For example, Agaricus bisporus,
  656. 26:15which is the mushroom, has the ability
  657. 26:17to produce this type of basidium with
  658. 26:20only two basidiospores; there are
  659. 26:22others, generally there are four
  660. 26:24basidiospores, but there are some that
  661. 26:26can present two in this case, right,
  662. 26:29Professor?
  663. 26:29And this is the zygospore. Yes, I’m
  664. 26:31listening.
  665. 26:32Is there a possibility of finding
  666. 26:34basidiospores and ascospores at the
  667. 26:36same time?
  668. 26:36No, no, no.
  669. 26:38Only
  670. 26:39one of
  671. 26:39it’s one type of sexual reproduction.
  672. 26:42For example, a fungus can form oospores
  673. 26:45, basidiospores, ascospores, or
  674. 26:47zygospores, but not both types. That is
  675. 26:50why they have been classified; that is
  676. 26:52why there is this classification in
  677. 26:53this case. So there you can observe
  678. 26:56this is a zygospore, for instance here
  679. 26:58is the zygospore, right? And this is
  680. 27:01the way it originates, right? In the
  681. 27:03reproduction class we will have next
  682. 27:05week, we will see it. And this is the
  683. 27:08appearance of the sporangiophores and
  684. 27:10the conidiophores. Look at the
  685. 27:12sporangiophores. Look, here is the
  686. 27:14hypha, and there is also a
  687. 27:15differentiation here, and here is a sac
  688. 27:18, and inside this sac we will have
  689. 27:20spores; these are called
  690. 27:21sporangiophores and these are
  691. 27:23conidiophores. Look here, right? Here
  692. 27:27we generally have the hypha where we
  693. 27:29will see phialides, and here are the
  694. 27:31conidia. These conidia that are in this
  695. 27:35case are also asexual. Yes, asexual,
  696. 27:38look, asexual this whole part, right?
  697. 27:41So, it is important that we are able to
  698. 27:44know this. Why? Because in taxonomic
  699. 27:46keys these diagrams will appear, and
  700. 27:48you have to look, even to say, "It's a
  701. 27:51Penicillium, but what type of
  702. 27:52Penicillium is it?" There are different
  703. 27:55species. So, you will have to see if
  704. 27:57they are monoverticillate,
  705. 27:58diverticillate, due to these whorls
  706. 28:00that they will present. No, there are
  707. 28:02some that are just long, others are
  708. 28:04more leafy. It is the same as
  709. 28:06Aspergillus, right? Aspergillus niger,
  710. 28:08for instance, is like a like a like a
  711. 28:11sun, right? Why? Because these
  712. 28:13phialides will surround the entire
  713. 28:14vesicle. On the other hand, Aspergillus
  714. 28:17fumigatus only has like a little tuft
  715. 28:19here, and that will allow me to
  716. 28:20differentiate the types of Aspergillus,
  717. 28:22right? That is why I told you that here
  718. 28:24one must have a lot of expertise
  719. 28:26generally to be able to identify them.
  720. 28:27You have to be at the microscope
  721. 28:29looking to be able to work, right? And
  722. 28:31these are the aspects of the colonies,
  723. 28:33right? They are oval, rounded,
  724. 28:35spiculate, right? They take the form
  725. 28:38that they are grouped in chains, others
  726. 28:40are all alone. So, this also has to be
  727. 28:43worked on. That is why in mycology one
  728. 28:46must use uh these these these these
  729. 28:48little rulers that go on the microscope
  730. 28:50, right? For us to be able to generally
  731. 28:55measure the sizes of the spores, and
  732. 28:57even the size in this case of the hypha
  733. 28:59to say if it is microsiphonous or
  734. 29:01macrosiphonous. I told you that those
  735. 29:05greater than 1 micrometer are generally
  736. 29:07macrosiphonous and smaller ones are
  737. 29:09microsiphonous, right? So, that will
  738. 29:12allow us to see the size that the
  739. 29:13conidia or in this case the hypha can
  740. 29:16generally have, right? Well, and these
  741. 29:18are aspects and sizes of ascospores,
  742. 29:20right? These are reproductions. Look,
  743. 29:22even the ascospores, the ascospores
  744. 29:25generally uh we will see that it is
  745. 29:27inside an ascus, right? Let's add more
  746. 29:30here. Let's No, if we are going to
  747. 29:34assume that we are going to have that
  748. 29:36this is an ascospore, right? This is an
  749. 29:39ascospore, and inside these ascospores
  750. 29:42they can generally come like this, so
  751. 29:44to speak, right? And these are the asci
  752. 29:46, this is an ascus, and inside this
  753. 29:48there can be different ascospores,
  754. 29:50right? Let's assume it's this type, LV,
  755. 29:53look, right? So inside this, they are
  756. 29:55going to come like this. The ascus has
  757. 29:58to break open so that they can, so that
  758. 30:00the fungus can reproduce in this case,
  759. 30:02because fungi reproduce by spores,
  760. 30:04right? So they can come like that, or
  761. 30:06they can be inside this ascus, and they
  762. 30:08have morphologies like Saturn-shaped,
  763. 30:11lemon-shaped, or urchin-shaped, but
  764. 30:13it's inside the ascus. These ones here
  765. 30:15that you are seeing in this case are
  766. 30:17ascospores, right? These are ascospores
  767. 30:20, the different forms of ascospores
  768. 30:22that can be determined. And this is
  769. 30:24when this ascus, we are generally going
  770. 30:26to break it, right? And these
  771. 30:28specialized structures I was telling
  772. 30:30you about can be, uh, they produce
  773. 30:32pseudoparenchyma, it can be a
  774. 30:34prosenchyma, it can present a rhizoid,
  775. 30:36a rhizomorph, or a haustorium, right?
  776. 30:39An appressorium. You have to determine
  777. 30:41that part, right? For example, there is
  778. 30:44a haustorium, right? Which is here
  779. 30:46inside, right? You make a cross-section
  780. 30:48, and these are mycelial aggregations.
  781. 30:51What happens is there are, uh, the
  782. 30:53hyphae generally, or also the
  783. 30:55conidiophores, right? Or the spores
  784. 30:59generally, uh, sometimes asexual ones
  785. 31:01can also, uh, aggregate, right? As a
  786. 31:05way for these spores to protect
  787. 31:07themselves, and they form sclerotia,
  788. 31:09right? Which is, is, is the filament,
  789. 31:13in this case, the union of fungi. Do
  790. 31:16you remember when we did, uh, uh, the
  791. 31:19sclerotia or sclerotium? Those are
  792. 31:22macroscopic, right? What it means is
  793. 31:24the union of hyphae, right? And it
  794. 31:27generally forms like small nodules, but
  795. 31:29something more that one can see, right?
  796. 31:32It is not, it is not, it is not that we
  797. 31:34need a microscope. This here we can
  798. 31:36observe, right? Uh, we can see that
  799. 31:39sometimes the conidiophores that we
  800. 31:40have seen here can join together, right
  801. 31:42? And form a coremia, right? So it is
  802. 31:46the, the coremia is the union of
  803. 31:48conidiophores, right? Or it could be
  804. 31:51that the spores, in this case asexual
  805. 31:53ones, can be placed inside a pycnidium,
  806. 31:56right? And they are generally protected
  807. 31:58there. Well, this is a pycnidium.
  808. 32:01Generally, if you see a pycnidium,
  809. 32:05Right? Now, in the case of yeasts, I
  810. 32:08was generally telling you that it is
  811. 32:10different in this case than for...than
  812. 32:12for...than for bacteria, right? Oh,
  813. 32:16sorry, different from molds, right?
  814. 32:18They are very similar to bacteria,
  815. 32:20right? We can determine the shape, we
  816. 32:23can determine the appearance, what
  817. 32:25elevation, what margin or what pigment,
  818. 32:27right? The shape is rounded, sometimes
  819. 32:30medium or irregular, it can be, right?
  820. 32:32What is the appearance? Right? They can
  821. 32:35be creamy in appearance, right? Uh, if
  822. 32:38it is flat, crateriform, or concave,
  823. 32:41right? Uh, the margin, right? If it has
  824. 32:44an entire margin, an undulate margin,
  825. 32:47and if it has the capacity in this case
  826. 32:49to produce pigments or not. So there we
  827. 32:52can see microscopic characteristics,
  828. 32:54right? As I was telling you, yeasts are
  829. 32:57unicellular, generally with creamy
  830. 32:59growth on culture media, very similar
  831. 33:01to bacteria. Reproduction can also be
  832. 33:04sexual or asexual, and asexual
  833. 33:06reproduction generally occurs by
  834. 33:08budding, right? So you will see that,
  835. 33:11uh, it will form a little bud. It is a,
  836. 33:13uh, that is a blastospore, right? In
  837. 33:17this case, but it can also have sexual
  838. 33:19reproduction which will be by
  839. 33:21ascospores or basidiospores, right? So
  840. 33:25we will also see that for, yes, yeasts
  841. 33:28generally, we will see here, uh, here
  842. 33:30that sometimes the yeasts that have
  843. 33:32this rounded shape, uh, when there is
  844. 33:34sexual reproduction, they will form
  845. 33:37ascospores inside. Yes, here they will
  846. 33:41form inside this. Why? Because this is
  847. 33:45the ascus, and inside this we will see
  848. 33:47ascospores, right? So there we will see
  849. 33:50if it is going to form or not form
  850. 33:52ascospores, right? So that is what we
  851. 33:55have to look at in this case, right?
  852. 33:57But look here, let's see for a moment,
  853. 34:03right? If you observe here, look here,
  854. 34:05these are ascospores. Here they are.
  855. 34:07Here, look, this one is inside. Yes, it
  856. 34:10is forming ascospores. Here it is also
  857. 34:12forming ascospores. And if you observe,
  858. 34:15the shapes are different, right?
  859. 34:16Elongated, rounded; for instance, this
  860. 34:19one here is forming, let's say,
  861. 34:21pseudomycelium, right? These are
  862. 34:23examples of yeasts that we might have,
  863. 34:25right? Look, there are the different
  864. 34:27elongated shapes. Look, here are
  865. 34:29ascospores. These are ascospores. Look
  866. 34:32inside here. This one is budding. Look,
  867. 34:34here is its little bud. It is sexual
  868. 34:36reproduction. Or, in a yeast, both
  869. 34:38sexual and asexual reproduction can
  870. 34:40occur. Ah, that’s right, but not an
  871. 34:42asexual reproduction where we will have
  872. 34:44a basidiospore or ascospore, right? It
  873. 34:46is either an ascospore or a
  874. 34:47basidiospore. Yes, here too, look, here
  875. 34:50you will see, they will even generally
  876. 34:52form a certain type of nodule. Look
  877. 34:55over here, they can be elongated here.
  878. 34:58Look, this is almost not—it is also
  879. 35:00elongated, they are yeasts, right? This
  880. 35:03is a pseudomycelium, for instance, look
  881. 35:05, a pseudomycelium, and these over here
  882. 35:08that you see are also chlamydospores,
  883. 35:10right? There are yeasts that will
  884. 35:12produce chlamydospores as well. So, you
  885. 35:16have to recognize that morphology,
  886. 35:18right? Now, apart from that, both molds
  887. 35:21and yeasts can undergo biochemical
  888. 35:24study, right? I told you that for the
  889. 35:28most part, what we generally observe is
  890. 35:30the microscopic and macroscopic study,
  891. 35:33but there are some that do require it,
  892. 35:35mainly yeasts, just as bacteria require
  893. 35:37a biochemical study in this case, but
  894. 35:39molds do too. So, the use of—it is a
  895. 35:45—it is a biochemical study that is
  896. 35:48used, right? Here, it is used the same
  897. 35:51way as it has been used for bacteria in
  898. 35:53Christensen’s urea agar, where we
  899. 35:55will see that the culture medium has
  900. 35:58urea and a pH indicator, right? And
  901. 36:02when we inoculate it, throughout the
  902. 36:04incubation period, if the microorganism
  903. 36:06is urease-positive, because there are
  904. 36:08fungi that will have this urease enzyme
  905. 36:11. Then, the final products will be
  906. 36:16basic, right? And since it has a color
  907. 36:19indicator there, we will generally see
  908. 36:21that it will turn—in this case, what
  909. 36:23color does it turn?—red, right? It is
  910. 36:26urease-positive. Another medium that is
  911. 36:30also used in this case is nitrate
  912. 36:32reduction. So, here you can use a
  913. 36:35nitrate broth or a nitrate agar, right?
  914. 36:38And if the microorganism has nitrate
  915. 36:41reductase, it will reduce nitrate to
  916. 36:43nitrite, and for that, reagent A and
  917. 36:45reagent B are used, right? Review that
  918. 36:48because we have already done it in
  919. 36:50microbiology. Eh, now there are other
  920. 36:53tests that in this case are used for
  921. 36:55molds—sorry, for yeasts, right? Which
  922. 36:59are the auxanogram and the zymogram.
  923. 37:04The auxanogram means the fungus's need
  924. 37:06to use carbon or nitrogen sources,
  925. 37:08right? So, look up what an auxanogram
  926. 37:14is and what a zymogram is, okay? I will
  927. 37:18ask you about it in the practical
  928. 37:19session next class. For an auxanogram,
  929. 37:24I will ask what carbon or nitrogen
  930. 37:26sources a fungus generally needs for
  931. 37:28its growth. On the other hand, a
  932. 37:34zymogram generally involves the
  933. 37:36utilization of carbohydrates with the
  934. 37:38formation of acid, so a medium is used
  935. 37:40where we determine if it is utilized or
  936. 37:43not, right? Let's use an example that
  937. 37:49we might have. Let's suppose, right?
  938. 37:56Let's assume we have a plate—well,
  939. 37:58not a petri dish, there has to be a
  940. 38:00special medium here, sometimes agar is
  941. 38:03used, right? And for an auxanogram,
  942. 38:08let's say I want to know, and here I
  943. 38:10will have my little disks, my
  944. 38:12carbohydrate disks, which could be
  945. 38:14glucose, lactose, sucrose, right? This
  946. 38:20is a medium that is free of carbon
  947. 38:22sources, right? And so, what you will
  948. 38:26do is take each little disk—it could
  949. 38:29be glucose, lactose, or sucrose, right?
  950. 38:34These disks are soaked, right? And this
  951. 38:38is the medium. And then, what you will
  952. 38:41do is inoculate the yeast you want to
  953. 38:43evaluate to see what it needs for its
  954. 38:45growth. Then, you will place the disks
  955. 38:49just like an antibiogram. An
  956. 38:53antibiogram. You place one disk here,
  957. 38:56one here, and one here. Right, I'm just
  958. 39:01giving an example; I can't draw well
  959. 39:03with this thing, but anyway. So, here
  960. 39:06we have the sugars, right? And I take
  961. 39:09it to incubate. If the microorganism
  962. 39:12needs—let's assume this one is
  963. 39:14lactose, this is sucrose, this is, well
  964. 39:17, maltose, let's put that here. If
  965. 39:25around these, say, you see growth
  966. 39:27forming—meaning you see the
  967. 39:29microorganism has moved here and grown
  968. 39:31—it means this microorganism needs
  969. 39:33lactose as a carbon source, right? And
  970. 39:39that is how it is tested, right? It
  971. 39:42could be that a yeast can use two
  972. 39:44carbon sources, right? But if it hasn't
  973. 39:48grown, this is called a lack of growth.
  974. 39:51Notice that when we talk about an
  975. 39:52antibiogram, we look for an inhibition
  976. 39:54zone where we didn't see growth, right?
  977. 39:58On the other hand, a growth halo forms
  978. 40:00here, meaning that around the disk,
  979. 40:02since the yeast needs that carbohydrate
  980. 40:04to grow, the yeast will grow around
  981. 40:06that little piece of filter paper
  982. 40:08soaked in sucrose. So, the auxanogram
  983. 40:12is used to demonstrate, in this case,
  984. 40:14the carbon and nitrogen requirements
  985. 40:17that the yeast needs to grow, right?
  986. 40:20And the zymogram is for fermentation,
  987. 40:22right? Here you can use a medium that
  988. 40:26has, let's suppose, glucose. Glucose,
  989. 40:31right? There are liquid media and there
  990. 40:33are also solid media, right? Glucose is
  991. 40:35used, and it also has a pH indicator
  992. 40:38here. If the microorganism uses the
  993. 40:41glucose, the final product will be
  994. 40:43acidic, and therefore, this medium will
  995. 40:46turn yellow, right? Always depending on
  996. 40:48which indicator is used, right? That is
  997. 40:50one example that can be done. And also
  998. 40:52the vitamin requirements. I told you
  999. 40:54yesterday that there are microorganisms
  1000. 40:56that need vitamins, right, to be able
  1001. 40:58to grow. And so, for yeasts, a series
  1002. 41:01of vitamins is also placed to know
  1003. 41:03which vitamins, in this case, they need
  1004. 41:05for their growth. Well, here you are
  1005. 41:10generally seeing examples of this is,
  1006. 41:13uh, this is urea, this is a urea
  1007. 41:15positive, and this is, ah no, excuse me
  1008. 41:17, this is a urea positive and this is a
  1009. 41:20negative one, right? Here, this currant
  1010. 41:25red color gives me a urease positive,
  1011. 41:27and this is a urease negative. Here is
  1012. 41:31an auxanogram, generally where you see
  1013. 41:33in this case, I don't know, it doesn't
  1014. 41:35look clear that the Well, but around
  1015. 41:37this you will see that look, the colony
  1016. 41:39has grown, right? In these, on the
  1017. 41:41other hand, it hasn't. These are disks
  1018. 41:43that are soaked with sugars, right? And
  1019. 41:45this is a nitrate broth, right? This is
  1020. 41:48nitrate positive and this is a negative
  1021. 41:50broth, right? They are nitrate positive
  1022. 41:52, nitrate negative. What other studies
  1023. 41:55can be done? I told you that
  1024. 41:56physiological studies can be done,
  1025. 41:58right? And to be able to observe if
  1026. 42:01they are growing, physiological or
  1027. 42:03chemical studies, if they can be
  1028. 42:05growing in culture media in liquid
  1029. 42:06media, uh, you can see at different
  1030. 42:08temperatures and if they are resistant
  1031. 42:11to chemical agents, right? So there,
  1032. 42:15you can also determine if they grow in
  1033. 42:17liquid media, and in liquid media we
  1034. 42:19will see if the growth is superficial
  1035. 42:21or at the bottom, right? That can also
  1036. 42:26be observed, done at different
  1037. 42:27temperatures to determine what
  1038. 42:29temperature these fungi tolerate, right
  1039. 42:31? And there is resistance to chemical
  1040. 42:34agents, right? To be able to determine,
  1041. 42:37uh, if it is resistant, say, even to
  1042. 42:39antibiotics, right? If they are
  1043. 42:42resistant to chloramphenicol, to
  1044. 42:44cycloheximide, it is determined. Now,
  1045. 42:48apart from these, these, uh, these
  1046. 42:51tests that we work with, in this case,
  1047. 42:53semi-automated methods are used, right?
  1048. 42:57For example, in the case of yeast, uh,
  1049. 43:00there is a semi-automated system which
  1050. 43:02is the API system, right? Which is a
  1051. 43:05gallery of 20 little tubes, right? Uh,
  1052. 43:08little tubes or cups, as they are
  1053. 43:10called, that have dehydrated substrates
  1054. 43:13and allow for, look, 19 assimilation
  1055. 43:15tests. Right? So, let's suppose that I
  1056. 43:18found a type of yeast and I want to see
  1057. 43:20what type of yeast it is. So, what I am
  1058. 43:22going to do is dilute this colony that
  1059. 43:24I have isolated. Previously, one must
  1060. 43:26isolate the colony and then perform
  1061. 43:28these biochemical tests, right? So you
  1062. 43:31inoculate with a minimal medium that is
  1063. 43:33a semi-solid medium and, uh, the yeasts
  1064. 43:36will reproduce if they use these
  1065. 43:38substrates, right? These, these
  1066. 43:40semi-automated methods allow for
  1067. 43:43identifying, look, 34 different species
  1068. 43:45of yeast, right? It is much faster than
  1069. 43:47doing the whole process we might have,
  1070. 43:49but these methods are much more
  1071. 43:51expensive, right? So, these readings,
  1072. 43:54uh, these reactions are compared with a
  1073. 43:56growth control and the identification
  1074. 43:58is obtained through a numerical code,
  1075. 44:00right? So, these already come with a
  1076. 44:03type of code one-two, and so one,
  1077. 44:05according to this reading, goes reading
  1078. 44:07; we go to an analytical catalog and
  1079. 44:09you can identify it. But these
  1080. 44:12semi-automated ones also have a
  1081. 44:14software program, right? That
  1082. 44:16immediately as you type, it starts
  1083. 44:18showing, uh, what identifies the type
  1084. 44:20of yeast it is, right? And nowadays,
  1085. 44:23chromogenic media are also being used,
  1086. 44:25right? Mainly for types of Candida and
  1087. 44:28there is another one for Prototheca
  1088. 44:30that has been used, right? In this case
  1089. 44:36, these are media that generally have
  1090. 44:38within their components a substance
  1091. 44:40that causes the yeast that is going to
  1092. 44:42act to form different colors, and that
  1093. 44:44difference in colors will allow me to
  1094. 44:46identify what type of yeast it is,
  1095. 44:48right? These are, uh, rapid methods,
  1096. 44:53much more expensive, yes, but they are
  1097. 44:55providing very good results for
  1098. 44:57identification, right? So, we can see
  1099. 45:00Candida albicans, which is green;
  1100. 45:02Candida tropicalis is blue; krusei is a
  1101. 45:05pinkish, slightly rough color; and
  1102. 45:07parapsilosis is a medium lilac-pink,
  1103. 45:10right? And the Prototheca species are
  1104. 45:12generally cream-colored, right? In fact
  1105. 45:15, there's even a new yeast being worked
  1106. 45:17on today, which is a type of Candida.
  1107. 45:20I’ve forgotten the species right now,
  1108. 45:23but this company has also released it,
  1109. 45:25mainly to be able to identify it using
  1110. 45:27a chromogenic method. There are other
  1111. 45:33enzymatic systems that are very similar
  1112. 45:35to what are called cassettes, just like
  1113. 45:37when you want to test for COVID, you
  1114. 45:39put a sample in, and it produces a
  1115. 45:41result, right? So there is also a VITEK
  1116. 45:45system for Candida to determine the
  1117. 45:47type of Candida, right? So you place
  1118. 45:49the sample here, and here you will see
  1119. 45:51if it is Candida or if it is not
  1120. 45:53Candida, right? These are the methods
  1121. 45:55being used today, and these are the
  1122. 45:57molecular methods currently in use,
  1123. 45:59such as PCR, right? So, you already
  1124. 46:02know the type of PCR where you
  1125. 46:04generally have to denature the strands,
  1126. 46:06then anneal, and then extend, right? So
  1127. 46:10those are the cases that can be worked
  1128. 46:12with, and in this case, molecular tests
  1129. 46:14. I was saying that today these
  1130. 46:16molecular methods are being used quite
  1131. 46:18a bit for fungi to be able to work. I
  1132. 46:20hope we can have this type of PCR to be
  1133. 46:22able to identify things much faster,
  1134. 46:24right? So, those are the techniques.
  1135. 46:28Now, if we want to do a type of
  1136. 46:30inoculation, and we have already
  1137. 46:31isolated it and are going to inoculate
  1138. 46:33it, what loops are we going to use?
  1139. 46:36Here you can use a ring or circular
  1140. 46:38loop; a non-calibrated one can be used
  1141. 46:40for streak plating and general
  1142. 46:42inoculation. This is used much more in
  1143. 46:45yeasts because it is very similar to
  1144. 46:47bacteria, right? So these loops are
  1145. 46:49used for yeast inoculation, for example
  1146. 46:52, right? We can use the L-shaped thick
  1147. 46:55wire loop. If you look, this wire is a
  1148. 46:59little thicker than the normal
  1149. 47:00bacteriological loop we are familiar
  1150. 47:02with. You have seen that we have
  1151. 47:05pointed loops and round loops, right?
  1152. 47:07Which are very thin. For fungi, we use
  1153. 47:09slightly thicker ones, right? And this
  1154. 47:13must be at a 90-degree angle in an
  1155. 47:15L-shape because this mainly allows us
  1156. 47:17to pluck the mycelium. We can't just
  1157. 47:20use a normal one for the mycelium, or
  1158. 47:22it will get tangled. But not here, here
  1159. 47:24we can take it out, right? This even
  1160. 47:27allows us, as I was saying, when the
  1161. 47:29fungi are hard, to make a small cut in
  1162. 47:31the agar to place it between a slide
  1163. 47:33and coverslip and press it down to
  1164. 47:35observe it, right? But there is also a
  1165. 47:39sharp-pointed inoculation loop that
  1166. 47:41serves to purify small colonies and
  1167. 47:43distribute fresh fungal preparations.
  1168. 47:46This one here is a type of
  1169. 47:47sharp-pointed needle that generally has
  1170. 47:49some little spikes. It's not, it's not
  1171. 47:52smooth. It is a bit rough, which also
  1172. 47:56allows me, in this case, to be able to
  1173. 47:58take the sample, right? You can even
  1174. 48:01use two of these because sometimes it
  1175. 48:03curls up, and I was saying that it
  1176. 48:04allows us, sometimes there's one here
  1177. 48:06that looks like a spatula, right? A
  1178. 48:08small spatula that also allows us, in
  1179. 48:11this case, to take the type of sample.
  1180. 48:15So, for the microscopic study, we are
  1181. 48:17going to look at the technique using
  1182. 48:19transparent adhesive tape, which is
  1183. 48:21called the tape mount, right? Why?
  1184. 48:25Because we are going to use a type of
  1185. 48:26uh adhesive tape. Nowadays we can do it
  1186. 48:31with Scotch tape, but today these
  1187. 48:33adhesive tapes are already available;
  1188. 48:35they even come pre-cut in laboratories,
  1189. 48:37right? You just pull one off, and it
  1190. 48:41looks, uh, like the size of a, of a
  1191. 48:44coverslip, right? And you place that,
  1192. 48:47although this is an adhesive tape that
  1193. 48:49allows, in this case, uh, generally
  1194. 48:51adhering to the colony, right? So, it
  1195. 48:54says here, "Press the adhesive side of
  1196. 48:56a piece of transparent tape onto the
  1197. 48:59surface of a colony." Place the tape
  1198. 49:01stretched out over a drop of
  1199. 49:02lactophenol blue or aniline blue, then
  1200. 49:05place it on a microscope slide, right?
  1201. 49:07So, what we are going to do is take
  1202. 49:08this here, we are going to put it on,
  1203. 49:10right? I will explain it to you later,
  1204. 49:12right? So, the transparent tape
  1205. 49:14preparation allows us to observe under
  1206. 49:15the microscope how the microorganism
  1207. 49:17develops in the culture. Generally, the
  1208. 49:19spores remain intact because, uh, the
  1209. 49:21problem with the bacteriological or
  1210. 49:23mycological loops we have is that
  1211. 49:25sometimes we even tear off the
  1212. 49:27conidiophores, and they cannot be
  1213. 49:29observed. Right? So, the spores also
  1214. 49:32remain intact, and identification is
  1215. 49:34carried out more easily. One of the
  1216. 49:39disadvantages is that if we don't press
  1217. 49:41firmly enough, the tape might not
  1218. 49:43adhere properly, and sometimes we won't
  1219. 49:45be able to identify it. So, there must
  1220. 49:49also be a methodology to be able to
  1221. 49:51work, right? So look here with the
  1222. 49:53bacteriological loop, you can see there
  1223. 49:55is a tape that isn't visible, and it's
  1224. 49:57being pressed; you press it here to be
  1225. 49:59able to observe it, right? Once it's
  1226. 50:02taken, usually with the scotch tape,
  1227. 50:04you place it on your glass slide, right
  1228. 50:06? And we have the other technique,
  1229. 50:09which is the wet mount. You already
  1230. 50:10know that one. It uses a slide and a
  1231. 50:13coverslip, generally with those loops I
  1232. 50:15told you about, the fine needles, right
  1233. 50:17? Or sometimes, if we can't do it with
  1234. 50:20one, we use two, right? Um, what you
  1235. 50:22should try to do is pull it from the
  1236. 50:24base and place it carefully in the
  1237. 50:26center of the drop of lactophenol blue,
  1238. 50:28right? Sometimes, if it's not possible,
  1239. 50:31you use two loops and you lower the
  1240. 50:33mycelium so that it can fall, right?
  1241. 50:37And in this case, the coverslip is
  1242. 50:39placed while avoiding the formation of
  1243. 50:41bubbles. That is indeed important,
  1244. 50:44right? So there it is too, look at the
  1245. 50:47bacteriological loop at a 90-degree
  1246. 50:49angle. You pull it mainly from here,
  1247. 50:52place, look, a portion, there it is
  1248. 50:54with its lactophenol blue, and you are
  1249. 50:56going to place it. Now, those are two
  1250. 51:01methods that are generally used most
  1251. 51:03frequently, but sometimes it happens
  1252. 51:05that those methods can help us identify
  1253. 51:07; but sometimes it happens that we only
  1254. 51:09take spores or hyphae and we can't see
  1255. 51:11them, so we can't identify the fungus,
  1256. 51:14and for this case, the microculture
  1257. 51:15technique or what is called slide
  1258. 51:17culture is used, right? So, here we are
  1259. 51:22going to need, generally, to have a—
  1260. 51:24we are first going to prepare where we
  1261. 51:27are going to culture. We are going to
  1262. 51:31need a Petri dish. In the Petri dish,
  1263. 51:35we are going to place a piece of filter
  1264. 51:37paper or it could be a piece of cotton.
  1265. 51:39Small glass rods are placed, cut to the
  1266. 51:43appropriate size, and a slide and a
  1267. 51:45coverslip are placed on top. All of
  1268. 51:49this is taken to be sterilized because
  1269. 51:51on that slide, I am going to place my
  1270. 51:54culture medium, it's called
  1271. 51:55microculture, but it must be sterilized
  1272. 51:57beforehand. Now, apart from that, you
  1273. 52:03can work with agar blocks, right?
  1274. 52:06Sabouraud, or whatever I need for my
  1275. 52:08culture medium for others, right? This
  1276. 52:11must be poured into a plate, and when
  1277. 52:13it has solidified in this case, it
  1278. 52:15should be approximately 4 mm deep—
  1279. 52:18small, not too thick. Then, with a
  1280. 52:23scalpel loop, I will make—you can
  1281. 52:25make them rounded or square—and with
  1282. 52:27a sterile scalpel, what I am going to
  1283. 52:30do is place this small piece of agar
  1284. 52:32onto my coverslip. Right? So, I have it
  1285. 52:37here now, in this case, uh, for me it
  1286. 52:39is much more...uh, easier to have a
  1287. 52:46little tube with agar, like PDA agar,
  1288. 52:48let's say, which is in a liquid state
  1289. 52:50and warm, and with a sterile
  1290. 52:52micropipette, I take and place one or
  1291. 52:54two little drops of agar on the slide
  1292. 52:56instead of cutting. So I place one or
  1293. 53:01two drops, and since they are tiny, it
  1294. 53:03solidifies very quickly. So, now I have
  1295. 53:07my culture medium on the microscope
  1296. 53:09slide, and then from the slide, with a
  1297. 53:11sterile needle, I generally go to the
  1298. 53:13colony I want to identify, take the
  1299. 53:15sample, and on that little piece of
  1300. 53:17culture medium, you are going to place,
  1301. 53:20in this case, uh...or you are going to
  1302. 53:22inoculate, right? Uh, sometimes you can
  1303. 53:26inoculate in four quadrants, in the
  1304. 53:28corners, or just in the center, and
  1305. 53:30then you place the coverslip on it.
  1306. 53:31That is why the coverslip must also be
  1307. 53:33sterile, right? So, after the
  1308. 53:35inoculation, the coverslip is placed.
  1309. 53:38And then, what is that paper or the
  1310. 53:40piece of cotton that is placed for? Why
  1311. 53:42? Because with a sterile pipette, uh,
  1312. 53:45what you are going to do is soak it
  1313. 53:47with water, in this case, sterile water
  1314. 53:49, right? Which means you are going to
  1315. 53:52moisten it to provide the necessary
  1316. 53:54humidity for the fungus to grow. Why?
  1317. 53:56Because if you place it as is, since
  1318. 53:58the medium is so thin, it will dry out
  1319. 54:00in two or three days, and then there
  1320. 54:02will be no water activity for the
  1321. 54:03fungus to grow. So, you generally have
  1322. 54:05to soak it a little, usually the bottom
  1323. 54:08part, in order to work, right? And it
  1324. 54:10is incubated, and then you will see it,
  1325. 54:12right? Then, the colony will grow
  1326. 54:14underneath the surface of the coverslip
  1327. 54:16. The assembly is examined periodically
  1328. 54:18with the naked eye to determine if that
  1329. 54:20little piece of agar has grown, right?
  1330. 54:23And then, after you have waited well,
  1331. 54:25from three to five days, you are going
  1332. 54:27to remove the coverslip and take
  1333. 54:29another slide; you will put lactophenol
  1334. 54:31blue on it and place that coverslip on
  1335. 54:33top, and on the other piece, where a
  1336. 54:35little bit of the medium remains, you
  1337. 54:37also add lactophenol blue and place a
  1338. 54:39coverslip. That is to say, you can
  1339. 54:41obtain two slides to be able to observe
  1340. 54:44what is around it. You have to apply
  1341. 54:47nail polish, you have to seal it, and
  1342. 54:49those microculture slides can last
  1343. 54:51forever if you keep them well, right?
  1344. 54:53So, this is a way of how you can
  1345. 54:55properly remove the little pieces. It
  1346. 54:57can be in a round shape, right? You
  1347. 54:58place it there. Here they are
  1348. 55:00inoculating, right? If you see here, it
  1349. 55:02is at the four distant points, but you
  1350. 55:04can also put it in the center, right?
  1351. 55:06And then you place the coverslip. And
  1352. 55:08after the coverslip, look, you have
  1353. 55:09already observed that it has grown. You
  1354. 55:11remove this here, add lactophenol blue,
  1355. 55:13and it can also be observed here. Look,
  1356. 55:15this is a little square. Look here,
  1357. 55:17here is the medium. Here it is, look at
  1358. 55:20the base, which is the paper. They have
  1359. 55:22already placed the culture medium. Here
  1360. 55:24is the fungus they want to inoculate,
  1361. 55:25they are going to inoculate it. Look
  1362. 55:27that here it is with this, this is
  1363. 55:28called, this is a mycological loop,
  1364. 55:30right? Spatula-shaped. They place it,
  1365. 55:32they are inoculating it, and then with
  1366. 55:34the coverslip, they generally place the
  1367. 55:36coverslip here. You are going to see
  1368. 55:38that here they are already adding water
  1369. 55:40with the wash bottle, right? The water
  1370. 55:42to moisten it. You take it to incubate.
  1371. 55:44Look, it has already grown here. You
  1372. 55:46are going to remove this part here.
  1373. 55:48Look, and here you have your slide with
  1374. 55:50lactophenol blue and you place this
  1375. 55:51coverslip here. But I can also use what
  1376. 55:54remains there, I add the lactophenol
  1377. 55:56blue in this case, and what I am going
  1378. 55:58to do is observe, right? So that is
  1379. 56:00what is done in this case, right? So,
  1380. 56:03you are going to have to carry out the
  1381. 56:05study of the following fungi. Here you
  1382. 56:07are going to see the different fungi,
  1383. 56:08it is an Aspergillus, which is what you
  1384. 56:10have to study, right? That is why your
  1385. 56:13task here is that, right? To perform
  1386. 56:16the study macro and microscopic of the
  1387. 56:19fungi. Look, here you have, you are
  1388. 56:22going to see, I am already putting the
  1389. 56:24genus and the species in this case so
  1390. 56:26that you can see them and you can
  1391. 56:28determine the characteristics for me,
  1392. 56:30right? First, try to do it yourselves
  1393. 56:33and then go to your bibliography to
  1394. 56:35corroborate. What is it that you are
  1395. 56:37seeing, right? What do you see? Do you
  1396. 56:38see a conidiophore, a sporangiophore,
  1397. 56:41do you see septate or coenocytic hyphae
  1398. 56:43, is it macro-siphonate,
  1399. 56:44micro-siphonate, do you see sexual or
  1400. 56:47asexual spores? You have to look at
  1401. 56:49that microscopically, and
  1402. 56:50macroscopically I am only showing you
  1403. 56:52the obverse, I am not showing you the
  1404. 56:54reverse, only the obverse, right? Look
  1405. 56:56here, right? So you are going to tell
  1406. 56:58me, it is as if you were in the microsc
  1407. 57:00—you have arrived at the laboratory
  1408. 57:02and this fungus has grown for you. So,
  1409. 57:04you perform the study. Later you will
  1410. 57:06perform the study with lactophenol blue
  1411. 57:08, which you won't actually do, but I am
  1412. 57:10providing you with the figure of what
  1413. 57:12possibly came out, right? Here you also
  1414. 57:15have what came out, right? Here you
  1415. 57:18also see this part, right? Here too,
  1416. 57:21look. So I am placing different types
  1417. 57:25of fungi here in this case for you to
  1418. 57:27observe, right? What do you see, is
  1419. 57:30there hyphal modification, is there no
  1420. 57:32hyphal modification, right? What shape
  1421. 57:34does it have? If it has sexual or
  1422. 57:36asexual spores, likewise here, what
  1423. 57:38modification does it have? And you can
  1424. 57:40put it there. So, these fungi are the
  1425. 57:42ones I am giving you for your
  1426. 57:43assignment so that you can identify
  1427. 57:45them.

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