Bio Lecture 01 Water, Enzymes & Biological Molecules for IMAT Biology | Full Concept + MCQs — Transcript
Full transcript
- 0:02Hello everyone.
- 0:04Welcome to IMAT Tutor.
- 0:05In this lecture, we are starting IMAT
- 0:07biology from the very foundation.
- 0:11Water, biological molecules, pH,
- 0:13buffers, and enzymes.
- 0:16These topics look basic, but IMAT does
- 0:19not test them in a basic way.
- 0:22IMAT will test definition,
- 0:24then exact wording, and cause-effect
- 0:27logic.
- 0:28If you understand the patterns in this
- 0:30lecture,
- 0:31you will score marks almost
- 0:32automatically. So, watch carefully and
- 0:35do not memorize blindly.
- 0:37Understand how IMAT thinks.
- 0:41First part
- 0:43will be about
- 0:45water
- 0:47and
- 0:49hydrogen bonding.
- 0:53This is an IMAT favorite concept.
- 0:56And we, first of all, need to know why
- 0:59water is special.
- 1:02IMAT repeatedly ask one simple idea in
- 1:05different forms. Which property of water
- 1:08explains a biological phenomenon?
- 1:12So, you must link property to function.
- 1:15Now, explain slowly.
- 1:17Water is special because it is a polar
- 1:20molecule.
- 1:23Back in our chemistry lecture, we
- 1:24studied that oxygen is highly
- 1:27electronegative,
- 1:29and hydrogen is less electronegative.
- 1:32So, the oxygen side becomes partially
- 1:34negative,
- 1:36and the hydrogen side becomes partially
- 1:38positive.
- 1:40This polarity allows hydrogen bonding.
- 1:44Now, list properties with IMAT logic.
- 1:47First of all, high specific heat
- 1:49capacity.
- 1:51Due to hydrogen bonding,
- 1:53water absorbs a lot of heat with only a
- 1:57small temperature rise. This stabilizes
- 2:00body temperature.
- 2:02Number two, high latent heat of
- 2:05vaporization.
- 2:06A large amount of energy is required to
- 2:09convert liquid water into vapor.
- 2:12IMET loves this exact example. Number
- 2:15three, cohesion and adhesion.
- 2:19What do we mean by cohesion and
- 2:20adhesion?
- 2:23They're basically the same.
- 2:26It means the molecules sticking to
- 2:28water.
- 2:29Cohesion holds water molecules together.
- 2:32I mean, cohesion will hold water
- 2:35molecules together. Let's say like this.
- 2:37And adhesion allows water to stick to
- 2:40surface.
- 2:41All right? So, this is the particular
- 2:43difference that we need to know about
- 2:45cohesion and adhesion.
- 2:48And the fourth phenomenon that we need
- 2:51to understand is that ice is less dense
- 2:54than liquid water.
- 2:55So, let's say we denote the density with
- 2:58row, the density of ice is less than the
- 3:03density of liquid water.
- 3:07And what would be the IMET pattern that
- 3:09we need to know?
- 3:11In IMET, there will be a question like
- 3:14which property explains X? You must
- 3:18instantly map phenomenon to property.
- 3:21What we have learned, let's review them
- 3:24in our lecture.
- 3:27We have talked about the specialty about
- 3:29water.
- 3:30We have talked the polarity and hydrogen
- 3:32bonding.
- 3:33And due to this hydrogen bonding, the
- 3:35high specific heat capacity, high latent
- 3:39heat of vaporization, cohesion, and
- 3:41adhesion.
- 3:42And also we have said that ice has less
- 3:45density than liquid water. And the IMET
- 3:48pattern, we have also discussed that.
- 3:53An example can be cooling by sweating is
- 3:56mainly explained by latent heat of
- 3:59vaporization. So, whenever we are asked
- 4:01about the latent heat of vaporization,
- 4:04we need to remember the cooling of our
- 4:07body by the process of sweating.
- 4:11Okay.
- 4:13Our next topic, our next section will
- 4:15discuss about hydrogen bonding.
- 4:19IUPAC has a very specific definition and
- 4:22say clearly that a hydrogen bond is an
- 4:25attraction between an hydrogen atom that
- 4:28is already covalently bonded to a
- 4:30strongly electronegative atom and a lone
- 4:33pair on another electronegative atom in
- 4:36a different molecule.
- 4:38To understand the definition, let's
- 4:40consider
- 4:41hydrogen.
- 4:44Then,
- 4:46we need to have
- 4:48an electronegative atom. It can be
- 4:50fluorine, oxygen, or nitrogen. Let's
- 4:53take fluorine.
- 4:55And the final condition is
- 4:58the fluorine needs to have lone pair.
- 5:02So, if these three conditions are met,
- 5:05we will see hydrogen bonding.
- 5:07And we have already said that
- 5:09electronegative atoms are nitrogen,
- 5:12oxygen, or fluorine.
- 5:14There's an important trap.
- 5:16Hydrogen bond is not the covalent bond
- 5:19inside the water molecule.
- 5:21Actually, it is an intermolecular
- 5:23attraction.
- 5:25Remember, intermolecular and
- 5:28intramolecular, they are different.
- 5:31Intramolecular means inside the
- 5:33molecule.
- 5:35But, intermolecular means between two
- 5:38molecules. That's why hydrogen bond is
- 5:43an intermolecular force.
- 5:48Right? And I might frequently test this
- 5:51confusion.
- 5:53So,
- 5:54this was the hydrogen bond that we were
- 5:56talking about. Hydrogen bond must have
- 6:00hydrogen atom
- 6:02and electronegative atom and a lone
- 6:05pair.
- 6:07Right? And we have discussed the trap
- 6:10that hydrogen bond is not a covalent
- 6:13bond inside the water molecule. Rather,
- 6:16it is a bond between molecules.
- 6:21Okay.
- 6:22Now,
- 6:23let's go to part two, where we will
- 6:25discuss biological molecules.
- 6:30So,
- 6:31if we want to talk about biological
- 6:33molecules,
- 6:35then the first thing that will come to
- 6:37our discussion will be
- 6:40carbohydrate.
- 6:42All right?
- 6:44So, what is carbohydrate?
- 6:46Carbohydrates
- 6:48are built from monosaccharide.
- 6:51To understand monosaccharide, you must
- 6:54understand that monosaccharides
- 6:57are made up of carbon, hydrogen, and
- 7:00oxygen.
- 7:01There will be a particular ratio among
- 7:04these three atoms.
- 7:06The ratio of carbon, hydrogen, and
- 7:08oxygen would be 1:2:1.
- 7:13And monosaccharide has different types
- 7:17based on the number of carbons. If there
- 7:19are three carbons, it will be triose.
- 7:22Gradually, if there will be six carbon,
- 7:25we will call it hexose.
- 7:27Hexose is very important.
- 7:30And when we call hexose, that means it
- 7:33has six carbon atoms.
- 7:35Right?
- 7:37So,
- 7:38if two monosaccharides, let's say, are
- 7:41getting attached, the bond will be
- 7:44called glycosidic bond.
- 7:46And we will get disaccharide, right?
- 7:50Disaccharide.
- 7:53And if we attached more than
- 7:5710 monosaccharides,
- 7:59then we will call it polysaccharide.
- 8:03There's another term called
- 8:05oligosaccharide.
- 8:09And in case of oligosaccharide, the
- 8:11number of monosaccharide would be
- 8:15less than 10.
- 8:16All right.
- 8:18And what is the key IMAT rule that we
- 8:20need to understand?
- 8:22When monosaccharides join, they form
- 8:26glycosidic bonds by condensation that we
- 8:29have discussed.
- 8:31And
- 8:33we need to say another thing.
- 8:35Each glycosidic bond formation removes
- 8:38one water molecule.
- 8:40Let's put that into practice.
- 8:43A common disaccharide example is
- 8:46sucrose.
- 8:49Sucrose is formed by glucose
- 8:53and fructose.
- 8:56What are their formulas? Glucose is
- 8:58C6H12O6.
- 9:01Same goes for fructose, C6H12O6.
- 9:05If we add them together, it was supposed
- 9:08to be like C12 H24O12.
- 9:13But
- 9:14due to a bond being formed between
- 9:16glucose and fructose, we need to
- 9:18subtract one molecule of water.
- 9:22And finally, the formula of sucrose
- 9:25would be C12
- 9:27H22O11.
- 9:30This is extremely testable.
- 9:33If a polysaccharide, on the other hand,
- 9:36contains n glucose units, and we will
- 9:39write it like this. First of all, we
- 9:41would write the formula of glucose
- 9:43C6H12O6.
- 9:47And initially, we would minus a water
- 9:50molecule from it. It will become like
- 9:52this, C6H5.
- 9:56Actually, not H5.
- 10:05C6
- 10:07H10O5.
- 10:10And we will put n with the whole
- 10:12bracket. And this structure is called
- 10:16polysaccharide.
- 10:20This logic appears every year. Right?
- 10:24Okay. Monosaccharide
- 10:26means glucose or pentose or triose or
- 10:31tetrose. Right? Where the ratio is
- 10:361:2:1.
- 10:39And disaccharide, when we are forming
- 10:41disaccharide, we need to put two
- 10:43monosaccharides together, and there will
- 10:46be a condensation reaction, which will
- 10:48subtract one water from the formula.
- 10:51And we have also discussed
- 10:53polysaccharide, where many
- 10:55monosaccharides are joined by glycosidic
- 10:57bonds. And if we want to write the
- 10:59formula of it, we need to write it like
- 11:02this. First, we will write the glucose
- 11:04formula C6H12O6,
- 11:06then minus one water molecule.
- 11:09And this will be like C6H10O5,
- 11:13then put n. That's why it is said that
- 11:16if a polysaccharide contains n glucose
- 11:19units, number of water molecules lost is
- 11:23n minus one. All right? Very important
- 11:28topic it was. Now, let's go
- 11:31to our next topic. But, before the next
- 11:34topic, let's
- 11:36also uncover this condensation rule.
- 11:39Each glycosidic bond formation removes
- 11:41one water molecule.
- 11:43It was already mentioned.
- 11:45Okay.
- 11:46Our next topic is lipid. We would put
- 11:482.2 for it.
- 11:52What is lipid or what are lipids?
- 11:55Lipids are hydrophobic molecules. That
- 11:58means they hate water. They don't want
- 12:00to react with water and they are not
- 12:02water soluble.
- 12:04And when we break down lipid,
- 12:08lipid is formed by triglyceride.
- 12:13So, let's write it like this.
- 12:17Inside a triglyceride, we will have one
- 12:20glycerol
- 12:23and
- 12:25three fatty acids.
- 12:32And the bond formed between them, this
- 12:35bond is called ester bonds.
- 12:40In glycerol, there will be presence of
- 12:43three OH groups. This is also important
- 12:46for the test.
- 12:48And fatty acid, fatty acid has a
- 12:50functional group and that functional
- 12:52group is C double O H.
- 12:55Right?
- 12:57Then the next important topic in lipid
- 13:00section is phospholipid.
- 13:02Phospholipids form cell membranes.
- 13:06Very important for us. If we discuss the
- 13:09cell membrane, we know that cell
- 13:12membrane is formed of phospholipid
- 13:14bilayer.
- 13:16And it has
- 13:19head and tail.
- 13:21Right? The head is hydrophilic.
- 13:25That means it loves water and it is
- 13:28soluble in water. The tail, this is
- 13:31hydrophobic.
- 13:33This is very much asked in the exams, so
- 13:36we need to remember it just the way it
- 13:38is.
- 13:39And
- 13:40I might test the recognition questions
- 13:44like this. Which part interacts with
- 13:46water? The answer would be the phosphate
- 13:49head. And which part avoids water? The
- 13:52answer would be hydrophobic tail.
- 13:55Right?
- 13:56So, this is written in our lecture note.
- 14:00Right?
- 14:02In case of lipid,
- 14:05we have said lipid is glycerol and three
- 14:08fatty acids and the bonds between them
- 14:10will be ester bonds. And in case of
- 14:13phospholipid, phospholipid is found
- 14:15mainly in membrane formation. Right? The
- 14:18head would be hydrophilic and the tail
- 14:20will be hydrophobic.
- 14:21The key concept, hydrophobic regions in
- 14:24membrane molecules are frequently
- 14:25tested. This the key concept,
- 14:27recognition type. Hydrophobic regions
- 14:30are the tail and the head is
- 14:33hydrophilic. All right? Now, let's go to
- 14:36the topic of protein.
- 14:39To understand protein, we need to
- 14:41understand amino acid.
- 14:43So, proteins are made up of so many
- 14:46amino acids together.
- 14:48How does an amino acid look like?
- 14:51It will have a carbon, it will have a
- 14:53carboxylic acid. It will also have an
- 14:56amino group.
- 14:58Then, hydrogen can be there and an alkyl
- 15:01group. This is the common formation of
- 15:04an amino acid. Amino acids are joining
- 15:06together, it will make peptide.
- 15:10And the peptide will formed polypeptide.
- 15:14And polypeptide
- 15:17eventually will form protein molecules.
- 15:21Right?
- 15:22So,
- 15:23we can say from our lecture that
- 15:26proteins are built from amino acids
- 15:29joined by the peptide bonds. Very
- 15:30important, and this reaction is also
- 15:33type of condensation
- 15:35reaction.
- 15:36And proteins has structural levels. One
- 15:40is primary, another one is secondary,
- 15:43tertiary, and quaternary.
- 15:45Sometimes primary can be addressed as
- 15:481°, secondary 2°, this is 3°, and this
- 15:51is 4°.
- 15:53What are the high yield links?
- 15:56There are some high links such as active
- 15:59site shape, denaturation, and enzyme
- 16:02specificity. What do we mean by this? If
- 16:06we decrease the pH, then the protein
- 16:09will get
- 16:10misfolded, and it will lose its
- 16:13functionality.
- 16:14If we increase the temperature, the
- 16:17protein might get coagulated,
- 16:19or it can become denatured.
- 16:22And also in case of enzyme,
- 16:24we must know enzymes are nothing but
- 16:28proteins.
- 16:29And there is a particular temperature
- 16:31range,
- 16:33in which range proteins will act
- 16:35superiorly and optimally.
- 16:38But if we increase the temperature too
- 16:40much or decrease it, then the enzyme
- 16:43will not work properly. And when we say
- 16:46that specificity,
- 16:48it means that
- 16:50for each chemical reaction, there will
- 16:52be a specific enzyme. Enzymes don't work
- 16:55in all the reactions. There will be some
- 16:57specific reactions reserved for it.
- 17:01All right?
- 17:02Now, our next topic,
- 17:05an exam favorite topic, that is nucleic
- 17:08acid.
- 17:11And
- 17:13if we want to understand nucleic acid,
- 17:15then we must know nucleic acid is a
- 17:18polymer
- 17:20of
- 17:24nucleotide.
- 17:28All right?
- 17:30So,
- 17:31in nucleotide, there will be two other
- 17:33components. One will be phosphate.
- 17:38Another will be nucleoside.
- 17:44Nucleoside has base and sugar.
- 17:51And the sugar
- 17:53that we are talking about in this will
- 17:55be
- 17:56ribose.
- 17:57If the sugar is found in RNA,
- 18:01then it will be ribose
- 18:05or
- 18:06C5H10O5.
- 18:11If we want to see the sugar inside DNA,
- 18:15then it will become deoxyribose.
- 18:18That means it will have one less oxygen
- 18:21in its formation.
- 18:23So, deoxyribose
- 18:26will be written like this.
- 18:28Deoxyribose and it will be C5H10O4.
- 18:33Very important to remember this formula.
- 18:36What about the base? There are two types
- 18:38of base. One is purine.
- 18:41Another one is pyrimidine.
- 18:45The name
- 18:47that is larger, their structure will be
- 18:49smaller. In case of purine, the name is
- 18:52smaller, but their structure is larger.
- 18:55Purines are adenine and guanine.
- 18:58Pyrimidines are cytosine,
- 19:00thymine, uracil.
- 19:03Uracil is found in case of RNA.
- 19:05And cytosine thymine are found in case
- 19:09of DNA.
- 19:10And the bases has particular structure.
- 19:14Adenine will always attach or pair with
- 19:17thymine with two hydrogen bonds between
- 19:20them.
- 19:21Cytosine
- 19:22pairs with guanine with three hydrogen
- 19:26bonds.
- 19:28Right? And if we are asked about the
- 19:30backbone of DNA, we have seen DNA like
- 19:33this.
- 19:34The backbone of DNA will be formed by
- 19:37phosphodiester bonds.
- 19:40I met will ask about the percentage base
- 19:43composition.
- 19:44It will also ask about the counting of
- 19:47hydrogen bonds, counting phosphodiester
- 19:50bonds,
- 19:52and complementary strand sequences.
- 19:55These are the scoring questions.
- 19:57We will practice each of them when we
- 20:00will be practicing our MCQ section.
- 20:04Let's review what we have studied in
- 20:07nucleic acid section.
- 20:10Basic, but this nucleic acid will be
- 20:13asked every single year.
- 20:15We have already said
- 20:16in case of DNA,
- 20:18DNA will have deoxyribonucleic acid. It
- 20:22will have base pairing.
- 20:24And there will be hydrogen bonds between
- 20:27the bases, and the backbone will have
- 20:29phosphodiester bonds. Right? What are
- 20:33the questions that are important?
- 20:35The questions are the following.
- 20:37There will be some percentage base
- 20:39problems, then hydrogen bonds counting
- 20:42or phosphodiester bonds. Also,
- 20:44complementary strand sequence. We'll
- 20:46practice them. You don't need to worry
- 20:48about those.
- 20:50Then, after completing this section,
- 20:53let's move to part three.
- 20:55In part three, we will talk about the
- 20:57pH.
- 20:58Right? pH and buffer.
- 21:03What is pH?
- 21:06Basically, we mean pH is
- 21:09acidity
- 21:10or how many hydrogen ions are present in
- 21:12a solution. That is the simple concept.
- 21:16But when we try to mathematically
- 21:17express it,
- 21:19pH will be equal to
- 21:22minus log
- 21:27base 10 of hydrogen ion concentration.
- 21:33So, the trap is that pH is logarithmic.
- 21:39That means that a change of one pH,
- 21:42let's say from two to three,
- 21:45means a tenfold change
- 21:49in hydrogen ion concentration.
- 21:52Right? This is very important.
- 21:55An IMAT will test this logic directly.
- 21:59And this is the pH that we have
- 22:01discussed. After that, buffer.
- 22:04So, what is buffer?
- 22:06And why is buffer important?
- 22:09Because our body's blood circulation
- 22:12system has a certain pH and the pH range
- 22:15is 7.35
- 22:17to 7.45.
- 22:19And keeping this range preserved is very
- 22:23crucial.
- 22:24And keeping this range preserved is very
- 22:27crucial for our
- 22:29bodily functions. Okay. And how do we
- 22:32make sure that the range is preserved?
- 22:36Buffer comes into action.
- 22:38Buffer is a solution
- 22:40in which if you add some base
- 22:44or if you add some acid, it will try to
- 22:48resist
- 22:49the change in pH. But don't you think
- 22:53that you can add as many bases or acids
- 22:57as possible. You can only add a few
- 23:01bases or few acids, all right?
- 23:04And what is the formation of buffer?
- 23:06Buffer usually has a weak acid
- 23:12and its conjugate base.
- 23:16All right?
- 23:20Let's say a weak acid example can be
- 23:22this, CH3COOH.
- 23:26This is called acetic acid
- 23:29or ethanoic acid. If we remove the
- 23:32hydrogen from this compound, then we
- 23:34will find its conjugate base and it will
- 23:37be CH3COO.
- 23:40Right?
- 23:41It can also be the opposite. I mean, you
- 23:44can also form buffer by a weak base and
- 23:47its conjugate acid.
- 23:49And why I met cares about this? Because
- 23:52enzymes work only in a narrow pH range.
- 23:56Right?
- 23:58And one famous acid that is present
- 24:00inside our body is found in our stomach
- 24:03and that is hydrochloric acid.
- 24:07On the other hand,
- 24:09the small intestine, it doesn't have
- 24:11acid. It's rather alkaline.
- 24:14Very important to know.
- 24:16I met often links buffers with digestion
- 24:18and enzyme activity.
- 24:21HCL pH is less than seven solution. On
- 24:25the other hand, alkaline pH will be
- 24:28greater than seven. Right?
- 24:30And
- 24:32let's cover what we have studied till
- 24:34now. We have studied the pH and buffers.
- 24:37pH definition
- 24:39Actually, this means that pH is
- 24:42negative log
- 24:45hydrogen ion concentration
- 24:48and log to the base 10. And the trap is
- 24:51that pH scale is logarithmic.
- 24:54pH six has 10 times higher
- 24:57proton concentration or hydrogen ion
- 25:01concentration than pH 7. That means that
- 25:04pH 6 is more acidic than pH 7 or pH 6 is
- 25:1010 times more acidic than pH 7.
- 25:13We have also talked about the buffers.
- 25:15Buffer means buffer is a solution that
- 25:17will resist pH change. Usually, buffer
- 25:20is formed by weak acid conjugate base.
- 25:23We have given an example. Also, it can
- 25:25be formed by weak base and conjugate
- 25:27acid. If we remember these two rules,
- 25:29then we can solve any type of buffer
- 25:31solutions or we can identify at least.
- 25:34And why I'm at chaos, we have said that
- 25:37enzymes have narrow optimum pH ranges.
- 25:40Digestion has different pH zones
- 25:42such as stomach acid has
- 25:45hydrochloric acid. On the other hand,
- 25:48small intestine is alkaline. We have
- 25:50already covered that as well.
- 25:53Okay.
- 25:55Our next big topic is enzyme.
- 25:59Right? Enzyme is the most tested
- 26:02section. That's why enzyme is very very
- 26:05important for us.
- 26:07What are the functions of enzymes? We
- 26:09have already said enzyme is a type of
- 26:11protein. But you must remember enzymes
- 26:14are not always proteins. Sometimes
- 26:16enzymes can have non-protein parts as
- 26:19well.
- 26:21If an enzyme is formed by protein
- 26:26and non-protein, then we will not call
- 26:29it enzyme anymore. We will call it
- 26:31conjugated
- 26:34protein.
- 26:36All right?
- 26:37And in that case,
- 26:39in conjugated protein, the protein part
- 26:42will be called apoenzyme.
- 26:46And the non-protein part will be called
- 26:50prosthetic group.
- 26:57If the prosthetic group is any metal
- 27:00ion,
- 27:01then we will call it cofactor.
- 27:05And if the prosthetic group is any
- 27:08organic compound,
- 27:11we will call it
- 27:13coenzyme.
- 27:17One important distinction that we need
- 27:19to make is that enzyme works in a narrow
- 27:22temperature and pH range.
- 27:24That means that if you put too much
- 27:26temperature on enzyme, it will lose its
- 27:29functionality. But coenzymes, they can
- 27:32tolerate much heat and it can work in
- 27:35high temperatures.
- 27:37Right? High temperatures. This is
- 27:39important and this can be tested in the
- 27:42IMAT.
- 27:43Right?
- 27:45In other words, we can also say enzymes
- 27:48are called biocatalyst.
- 27:51Biocatalyst.
- 27:53Because enzymes help a reaction to move
- 27:57forward. It will help a reaction to move
- 28:00forward, but it doesn't participate in
- 28:03any reaction directly. And how does
- 28:06enzyme help a reaction move forward?
- 28:09Enzyme will decrease the activation
- 28:11energy. Right? This is very important.
- 28:15Enzyme will decrease the activation
- 28:18energy. What is activation energy?
- 28:20Let's say this is a reactant and it
- 28:23wants to become product.
- 28:25So,
- 28:27to
- 28:29complete this reaction, we must have a
- 28:32particular activation energy.
- 28:35But when we add the enzyme in this
- 28:38reaction, the activation energy
- 28:41or EA will decrease and the reaction
- 28:44will easily occur.
- 28:46And this is very high yield when it
- 28:48comes to the function of enzymes. They
- 28:52are not consumed in the reaction,
- 28:55right? And they increase the reaction
- 28:57rate by lowering activation energy. And
- 29:00what about the temperature and pH
- 29:02effects
- 29:03on enzyme?
- 29:05Let's explain the logic step by step.
- 29:08Let's say the temperature is increasing.
- 29:11If the temperature increases,
- 29:13then the molecules inside a compound, it
- 29:17will increase its kinetic energy. And if
- 29:20the kinetic energy increases, the
- 29:22collision between the atoms, the
- 29:24molecules will increase as well.
- 29:26And as a result, the rate of reaction,
- 29:29let's say the rate of reaction will also
- 29:31increase.
- 29:32But remember, there will be an optimum
- 29:35temperature. If you go beyond optimum
- 29:38temperature, then enzyme will denature
- 29:41and active site shape changes.
- 29:44Activity rapid to decreases. What do we
- 29:46mean by the active site? Let's say this
- 29:49is an enzyme.
- 29:50Enzyme has an active site, and
- 29:53let's say this is the active site, AS.
- 29:56This active site will bind with
- 29:58substrate. The substrate means reactant.
- 30:01Let's say with black block we mean a
- 30:05substrate. If the active site gets
- 30:08deactivated, then it will not
- 30:10participate in any reaction.
- 30:13And now talk about pH.
- 30:16If we change the pH, then the ionization
- 30:19of amino acid chain will also change.
- 30:22And this will alter the bonding. Let's
- 30:24say
- 30:25amino acid is bonding with another amino
- 30:28acid.
- 30:29If we change the pH,
- 30:31this will alter the bonding, and the
- 30:33change of shape of the active site will
- 30:36be also present in this.
- 30:38This sentence alone answers many IMAT
- 30:41questions.
- 30:42The final part about
- 30:45enzyme is competitive and
- 30:48non-competitive inhibition.
- 30:51Competitive
- 30:53versus non-competitive
- 30:56inhibition. So,
- 30:58say slowly and clearly, what is
- 31:00competitive inhibition? The inhibitor
- 31:02competes with the substrate for the
- 31:04active site.
- 31:06And in case of competitive inhibition,
- 31:09increasing the substrate
- 31:13can reduce the inhibition.
- 31:16In case of competitive inhibition, let's
- 31:18say you have substrate, I mean reactant,
- 31:20let's say A and B, and it is making C
- 31:23and D. These two will be called
- 31:25substrate. If you increase the substrate
- 31:27concentration, then the inhibition will
- 31:30be reduced gradually. That means that if
- 31:34in case of competitive inhibition, if
- 31:37you increase the substrate
- 31:39concentration, eventually there will be
- 31:41reduction in
- 31:43the inhibition.
- 31:45And what about non-competitive?
- 31:48In case of non-competitive inhibition,
- 31:50the inhibitor
- 31:52will bind to an allosteric site.
- 31:55In case of non-competitive inhibition,
- 31:58you might increase the substrate
- 32:00concentration, but the inhibition cannot
- 32:03be overcome.
- 32:04And I met
- 32:06will ask you this question as if it's
- 32:08your second nature.
- 32:10So, we have covered so many things about
- 32:12enzyme. Let's review them one by one.
- 32:16And we have said what enzymes do.
- 32:19Enzymes are biocatalyst.
- 32:21They will increase the reaction rate.
- 32:23Remember, they will not decrease. They
- 32:25will only increase the reaction rate.
- 32:27How? By lowering activation energy.
- 32:30And after the reaction is complete, the
- 32:33enzymes will not be consumed.
- 32:36And what are the effects of temperature
- 32:37and pH effects? I met with love crafts.
- 32:40We will
- 32:42solve it and optimum pH temperature
- 32:44interpretation. And I met will also test
- 32:47the kind of data reasoning. So, what is
- 32:49the key logic that we need to review? If
- 32:51we increase the temperature, the kinetic
- 32:54energy will increase and the collision
- 32:56frequency will also increase up until
- 32:59the optimum temperature, right?
- 33:02If we increase the temperature beyond
- 33:04the optimum temperature, enzyme will
- 33:07lose its active site and pH changes
- 33:10ionization of amino acid, that's why
- 33:12there will be an optimum pH, too.
- 33:14We have covered the competitive versus
- 33:16non-competitive inhibition. In case of
- 33:19non-competitive,
- 33:21let's cover the non-competitive first.
- 33:23If you increase the concentration of the
- 33:26substrate, you will not be able to
- 33:29increase the rate of reaction or you
- 33:32will not be able to reduce the
- 33:35inhibition. But, competitive inhibition
- 33:38gives you that opportunity. If you
- 33:40increase the substrate concentration,
- 33:42then the inhibition effect can be
- 33:45controlled or reduced.
- 33:47So, we have covered basic topics now and
- 33:50we need to solve some questions.
- 33:53The first question that we are seeing, I
- 33:56will give you 15 seconds.
- 33:58The question is,
- 34:00which property of water is most
- 34:02important when heat is lost from human
- 34:05skin during sweating?
- 34:09Pause the video, attempt the question,
- 34:11then come back for solutions.
- 34:14Okay, we have given you the time.
- 34:17Okay, now let's solve the question. We
- 34:19have said that
- 34:21there is a property called latent heat
- 34:25of vaporization.
- 34:27That means water will absorb some
- 34:29temperature or heat before it changes
- 34:33its physical state. Heat that water can
- 34:37hold
- 34:39that heat is called latent heat. And
- 34:42that's why the answer would be latent
- 34:43heat of vaporization.
- 34:46Okay, the next question.
- 34:48The question states a polysaccharide is
- 34:50made by joining five glucose monomers.
- 34:53What is its chemical formula? The
- 34:55options will look like this. C6
- 34:58H12 O6
- 35:00then C30 H52 O26
- 35:05Let's put the third option C30 H60 O40
- 35:11then C5 H60 O5. The final one is
- 35:16CH then N-1
- 35:20O
- 35:21then put a bracket
- 35:24and two another bracket.
- 35:27How to solve this?
- 35:29We need to remember when one glucose
- 35:32monomer
- 35:34attaches with another monomer we will
- 35:37lose one water
- 35:39molecule. But we see that five glucose
- 35:42monomers are attaching here. That's why
- 35:45we will subtract four water molecules.
- 35:49We need to keep it in mind. Now, let's
- 35:52write the formula of glucose that will
- 35:54be C6 H12
- 35:57O6
- 35:59multiply it with five. That would give
- 36:01us C30
- 36:04then H60 and O
- 36:0830.
- 36:09Remember we need to subtract four water
- 36:11molecules. We will subtract it. It will
- 36:14be like 4 H2O.
- 36:16And it will give us if we count it
- 36:19properly then C30 H52
- 36:23and O26.
- 36:26That's why our answer would be option B.
- 36:30Now let's go with question three.
- 36:32We see that there is a sequence of C C G
- 36:36T T A T T G A and the sequence is found
- 36:40on one strand of deoxyribonucleic acid
- 36:42helix. Which sequence is on the
- 36:45complementary strand? To solve this
- 36:47question, we must remember C will
- 36:51have bond with G and A will have bond
- 36:54with T. So let's write under C we will
- 36:58write G another G C
- 37:01then A another A another T then two more
- 37:07A's
- 37:10and C and T. Let's see where we can find
- 37:14this option. We see that we found this
- 37:16option in option A. That is G G C A A T
- 37:22A A C T. Let's move to the next
- 37:23question.
- 37:25We remember that in case of competitive
- 37:28inhibition
- 37:29if you increase the substrate
- 37:31concentration, then you can reduce
- 37:34the inhibition. So keeping that in mind,
- 37:37we need to read five of the options.
- 37:41The option one or option A has competes
- 37:44with substrate for the active site.
- 37:47Is that true?
- 37:49Yes, this is true. In competitive
- 37:52inhibition, the inhibitor will have
- 37:54competition with the substrate for
- 37:56active site. We need to remind you the
- 37:58active site means the place of the
- 38:00substrate where
- 38:02the enzyme will get attached. Another
- 38:05term is allosteric site. In case of
- 38:08allosteric site, there will be another
- 38:11regulatory protein or controller
- 38:13molecule that can change the shape of
- 38:16the active site of an enzyme. All right?
- 38:19Don't get confused between active site
- 38:21and allosteric site. As we have gotten
- 38:24option A as our correct answer, we will
- 38:26not look for the other options.
- 38:29Even after that, I can explain why the
- 38:32other options are not correct. In option
- 38:34B, we see that
- 38:36it is said that the inhibitor will bind
- 38:39to substrate. No, this is not true. This
- 38:42is false. It will not bind to the
- 38:44substrate.
- 38:45And option C, the inhibitor binds to
- 38:48allosteric site. No.
- 38:52And
- 38:53the other options are not correct as
- 38:55well.
- 38:56Now, let's move to question five.
- 38:59What does option five say?
- 39:02Option five says that when investigating
- 39:05enzyme activity, enzyme P has optimum pH
- 39:08of 4.5 and enzyme Q has optimum pH of
- 39:129.5. Which statement must be correct?
- 39:15Okay.
- 39:16Option A says that both enzymes have the
- 39:19same optimum temperature. Is that true?
- 39:22No.
- 39:23Because they have different optimum pH,
- 39:26they will not have the same optimum
- 39:28temperature. What about option B? Enzyme
- 39:31P is denatured at pH 4.5. No.
- 39:36It is not denatured. Enzyme P will show
- 39:40maximum activity in case of pH 4.5. What
- 39:44about option C? Enzyme Q is more active
- 39:46in acidic conditions.
- 39:48Enzyme Q has optimum pH of 9.5, which is
- 39:52an alkaline pH. That's why this is not
- 39:55correct as well. What about option D?
- 39:58Option D says changing pH changes
- 40:01ionization of amino acid side chains and
- 40:04can alter the active site. This is true.
- 40:06We have already said. And what about
- 40:08option E? pH doesn't affect enzyme
- 40:10activity. Not true. pH can significantly
- 40:13affect enzyme activity. That's why our
- 40:15answer would be D.
- 40:17Now, our next part
- 40:19is full of solutions.
- 40:22I will give you some mini homeworks
- 40:25from the papers. Practice the patterns.
- 40:28Practice the deoxyribonucleic acid base
- 40:30percentage, hydrogen bonds,
- 40:33phosphodiester bonds counting, and also
- 40:35enzyme pH and temperature graph
- 40:37interpretation. If you like my lecture,
- 40:40please do
- 40:42put a like and subscribe. And if you
- 40:44want to buy my bundle, I have
- 40:47a PDF. Thank you. See you in the next
- 40:50lecture.
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