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Bio Lecture 01 Water, Enzymes & Biological Molecules for IMAT Biology | Full Concept + MCQs — Transcript

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  1. 0:02Hello everyone.
  2. 0:04Welcome to IMAT Tutor.
  3. 0:05In this lecture, we are starting IMAT
  4. 0:07biology from the very foundation.
  5. 0:11Water, biological molecules, pH,
  6. 0:13buffers, and enzymes.
  7. 0:16These topics look basic, but IMAT does
  8. 0:19not test them in a basic way.
  9. 0:22IMAT will test definition,
  10. 0:24then exact wording, and cause-effect
  11. 0:27logic.
  12. 0:28If you understand the patterns in this
  13. 0:30lecture,
  14. 0:31you will score marks almost
  15. 0:32automatically. So, watch carefully and
  16. 0:35do not memorize blindly.
  17. 0:37Understand how IMAT thinks.
  18. 0:41First part
  19. 0:43will be about
  20. 0:45water
  21. 0:47and
  22. 0:49hydrogen bonding.
  23. 0:53This is an IMAT favorite concept.
  24. 0:56And we, first of all, need to know why
  25. 0:59water is special.
  26. 1:02IMAT repeatedly ask one simple idea in
  27. 1:05different forms. Which property of water
  28. 1:08explains a biological phenomenon?
  29. 1:12So, you must link property to function.
  30. 1:15Now, explain slowly.
  31. 1:17Water is special because it is a polar
  32. 1:20molecule.
  33. 1:23Back in our chemistry lecture, we
  34. 1:24studied that oxygen is highly
  35. 1:27electronegative,
  36. 1:29and hydrogen is less electronegative.
  37. 1:32So, the oxygen side becomes partially
  38. 1:34negative,
  39. 1:36and the hydrogen side becomes partially
  40. 1:38positive.
  41. 1:40This polarity allows hydrogen bonding.
  42. 1:44Now, list properties with IMAT logic.
  43. 1:47First of all, high specific heat
  44. 1:49capacity.
  45. 1:51Due to hydrogen bonding,
  46. 1:53water absorbs a lot of heat with only a
  47. 1:57small temperature rise. This stabilizes
  48. 2:00body temperature.
  49. 2:02Number two, high latent heat of
  50. 2:05vaporization.
  51. 2:06A large amount of energy is required to
  52. 2:09convert liquid water into vapor.
  53. 2:12IMET loves this exact example. Number
  54. 2:15three, cohesion and adhesion.
  55. 2:19What do we mean by cohesion and
  56. 2:20adhesion?
  57. 2:23They're basically the same.
  58. 2:26It means the molecules sticking to
  59. 2:28water.
  60. 2:29Cohesion holds water molecules together.
  61. 2:32I mean, cohesion will hold water
  62. 2:35molecules together. Let's say like this.
  63. 2:37And adhesion allows water to stick to
  64. 2:40surface.
  65. 2:41All right? So, this is the particular
  66. 2:43difference that we need to know about
  67. 2:45cohesion and adhesion.
  68. 2:48And the fourth phenomenon that we need
  69. 2:51to understand is that ice is less dense
  70. 2:54than liquid water.
  71. 2:55So, let's say we denote the density with
  72. 2:58row, the density of ice is less than the
  73. 3:03density of liquid water.
  74. 3:07And what would be the IMET pattern that
  75. 3:09we need to know?
  76. 3:11In IMET, there will be a question like
  77. 3:14which property explains X? You must
  78. 3:18instantly map phenomenon to property.
  79. 3:21What we have learned, let's review them
  80. 3:24in our lecture.
  81. 3:27We have talked about the specialty about
  82. 3:29water.
  83. 3:30We have talked the polarity and hydrogen
  84. 3:32bonding.
  85. 3:33And due to this hydrogen bonding, the
  86. 3:35high specific heat capacity, high latent
  87. 3:39heat of vaporization, cohesion, and
  88. 3:41adhesion.
  89. 3:42And also we have said that ice has less
  90. 3:45density than liquid water. And the IMET
  91. 3:48pattern, we have also discussed that.
  92. 3:53An example can be cooling by sweating is
  93. 3:56mainly explained by latent heat of
  94. 3:59vaporization. So, whenever we are asked
  95. 4:01about the latent heat of vaporization,
  96. 4:04we need to remember the cooling of our
  97. 4:07body by the process of sweating.
  98. 4:11Okay.
  99. 4:13Our next topic, our next section will
  100. 4:15discuss about hydrogen bonding.
  101. 4:19IUPAC has a very specific definition and
  102. 4:22say clearly that a hydrogen bond is an
  103. 4:25attraction between an hydrogen atom that
  104. 4:28is already covalently bonded to a
  105. 4:30strongly electronegative atom and a lone
  106. 4:33pair on another electronegative atom in
  107. 4:36a different molecule.
  108. 4:38To understand the definition, let's
  109. 4:40consider
  110. 4:41hydrogen.
  111. 4:44Then,
  112. 4:46we need to have
  113. 4:48an electronegative atom. It can be
  114. 4:50fluorine, oxygen, or nitrogen. Let's
  115. 4:53take fluorine.
  116. 4:55And the final condition is
  117. 4:58the fluorine needs to have lone pair.
  118. 5:02So, if these three conditions are met,
  119. 5:05we will see hydrogen bonding.
  120. 5:07And we have already said that
  121. 5:09electronegative atoms are nitrogen,
  122. 5:12oxygen, or fluorine.
  123. 5:14There's an important trap.
  124. 5:16Hydrogen bond is not the covalent bond
  125. 5:19inside the water molecule.
  126. 5:21Actually, it is an intermolecular
  127. 5:23attraction.
  128. 5:25Remember, intermolecular and
  129. 5:28intramolecular, they are different.
  130. 5:31Intramolecular means inside the
  131. 5:33molecule.
  132. 5:35But, intermolecular means between two
  133. 5:38molecules. That's why hydrogen bond is
  134. 5:43an intermolecular force.
  135. 5:48Right? And I might frequently test this
  136. 5:51confusion.
  137. 5:53So,
  138. 5:54this was the hydrogen bond that we were
  139. 5:56talking about. Hydrogen bond must have
  140. 6:00hydrogen atom
  141. 6:02and electronegative atom and a lone
  142. 6:05pair.
  143. 6:07Right? And we have discussed the trap
  144. 6:10that hydrogen bond is not a covalent
  145. 6:13bond inside the water molecule. Rather,
  146. 6:16it is a bond between molecules.
  147. 6:21Okay.
  148. 6:22Now,
  149. 6:23let's go to part two, where we will
  150. 6:25discuss biological molecules.
  151. 6:30So,
  152. 6:31if we want to talk about biological
  153. 6:33molecules,
  154. 6:35then the first thing that will come to
  155. 6:37our discussion will be
  156. 6:40carbohydrate.
  157. 6:42All right?
  158. 6:44So, what is carbohydrate?
  159. 6:46Carbohydrates
  160. 6:48are built from monosaccharide.
  161. 6:51To understand monosaccharide, you must
  162. 6:54understand that monosaccharides
  163. 6:57are made up of carbon, hydrogen, and
  164. 7:00oxygen.
  165. 7:01There will be a particular ratio among
  166. 7:04these three atoms.
  167. 7:06The ratio of carbon, hydrogen, and
  168. 7:08oxygen would be 1:2:1.
  169. 7:13And monosaccharide has different types
  170. 7:17based on the number of carbons. If there
  171. 7:19are three carbons, it will be triose.
  172. 7:22Gradually, if there will be six carbon,
  173. 7:25we will call it hexose.
  174. 7:27Hexose is very important.
  175. 7:30And when we call hexose, that means it
  176. 7:33has six carbon atoms.
  177. 7:35Right?
  178. 7:37So,
  179. 7:38if two monosaccharides, let's say, are
  180. 7:41getting attached, the bond will be
  181. 7:44called glycosidic bond.
  182. 7:46And we will get disaccharide, right?
  183. 7:50Disaccharide.
  184. 7:53And if we attached more than
  185. 7:5710 monosaccharides,
  186. 7:59then we will call it polysaccharide.
  187. 8:03There's another term called
  188. 8:05oligosaccharide.
  189. 8:09And in case of oligosaccharide, the
  190. 8:11number of monosaccharide would be
  191. 8:15less than 10.
  192. 8:16All right.
  193. 8:18And what is the key IMAT rule that we
  194. 8:20need to understand?
  195. 8:22When monosaccharides join, they form
  196. 8:26glycosidic bonds by condensation that we
  197. 8:29have discussed.
  198. 8:31And
  199. 8:33we need to say another thing.
  200. 8:35Each glycosidic bond formation removes
  201. 8:38one water molecule.
  202. 8:40Let's put that into practice.
  203. 8:43A common disaccharide example is
  204. 8:46sucrose.
  205. 8:49Sucrose is formed by glucose
  206. 8:53and fructose.
  207. 8:56What are their formulas? Glucose is
  208. 8:58C6H12O6.
  209. 9:01Same goes for fructose, C6H12O6.
  210. 9:05If we add them together, it was supposed
  211. 9:08to be like C12 H24O12.
  212. 9:13But
  213. 9:14due to a bond being formed between
  214. 9:16glucose and fructose, we need to
  215. 9:18subtract one molecule of water.
  216. 9:22And finally, the formula of sucrose
  217. 9:25would be C12
  218. 9:27H22O11.
  219. 9:30This is extremely testable.
  220. 9:33If a polysaccharide, on the other hand,
  221. 9:36contains n glucose units, and we will
  222. 9:39write it like this. First of all, we
  223. 9:41would write the formula of glucose
  224. 9:43C6H12O6.
  225. 9:47And initially, we would minus a water
  226. 9:50molecule from it. It will become like
  227. 9:52this, C6H5.
  228. 9:56Actually, not H5.
  229. 10:05C6
  230. 10:07H10O5.
  231. 10:10And we will put n with the whole
  232. 10:12bracket. And this structure is called
  233. 10:16polysaccharide.
  234. 10:20This logic appears every year. Right?
  235. 10:24Okay. Monosaccharide
  236. 10:26means glucose or pentose or triose or
  237. 10:31tetrose. Right? Where the ratio is
  238. 10:361:2:1.
  239. 10:39And disaccharide, when we are forming
  240. 10:41disaccharide, we need to put two
  241. 10:43monosaccharides together, and there will
  242. 10:46be a condensation reaction, which will
  243. 10:48subtract one water from the formula.
  244. 10:51And we have also discussed
  245. 10:53polysaccharide, where many
  246. 10:55monosaccharides are joined by glycosidic
  247. 10:57bonds. And if we want to write the
  248. 10:59formula of it, we need to write it like
  249. 11:02this. First, we will write the glucose
  250. 11:04formula C6H12O6,
  251. 11:06then minus one water molecule.
  252. 11:09And this will be like C6H10O5,
  253. 11:13then put n. That's why it is said that
  254. 11:16if a polysaccharide contains n glucose
  255. 11:19units, number of water molecules lost is
  256. 11:23n minus one. All right? Very important
  257. 11:28topic it was. Now, let's go
  258. 11:31to our next topic. But, before the next
  259. 11:34topic, let's
  260. 11:36also uncover this condensation rule.
  261. 11:39Each glycosidic bond formation removes
  262. 11:41one water molecule.
  263. 11:43It was already mentioned.
  264. 11:45Okay.
  265. 11:46Our next topic is lipid. We would put
  266. 11:482.2 for it.
  267. 11:52What is lipid or what are lipids?
  268. 11:55Lipids are hydrophobic molecules. That
  269. 11:58means they hate water. They don't want
  270. 12:00to react with water and they are not
  271. 12:02water soluble.
  272. 12:04And when we break down lipid,
  273. 12:08lipid is formed by triglyceride.
  274. 12:13So, let's write it like this.
  275. 12:17Inside a triglyceride, we will have one
  276. 12:20glycerol
  277. 12:23and
  278. 12:25three fatty acids.
  279. 12:32And the bond formed between them, this
  280. 12:35bond is called ester bonds.
  281. 12:40In glycerol, there will be presence of
  282. 12:43three OH groups. This is also important
  283. 12:46for the test.
  284. 12:48And fatty acid, fatty acid has a
  285. 12:50functional group and that functional
  286. 12:52group is C double O H.
  287. 12:55Right?
  288. 12:57Then the next important topic in lipid
  289. 13:00section is phospholipid.
  290. 13:02Phospholipids form cell membranes.
  291. 13:06Very important for us. If we discuss the
  292. 13:09cell membrane, we know that cell
  293. 13:12membrane is formed of phospholipid
  294. 13:14bilayer.
  295. 13:16And it has
  296. 13:19head and tail.
  297. 13:21Right? The head is hydrophilic.
  298. 13:25That means it loves water and it is
  299. 13:28soluble in water. The tail, this is
  300. 13:31hydrophobic.
  301. 13:33This is very much asked in the exams, so
  302. 13:36we need to remember it just the way it
  303. 13:38is.
  304. 13:39And
  305. 13:40I might test the recognition questions
  306. 13:44like this. Which part interacts with
  307. 13:46water? The answer would be the phosphate
  308. 13:49head. And which part avoids water? The
  309. 13:52answer would be hydrophobic tail.
  310. 13:55Right?
  311. 13:56So, this is written in our lecture note.
  312. 14:00Right?
  313. 14:02In case of lipid,
  314. 14:05we have said lipid is glycerol and three
  315. 14:08fatty acids and the bonds between them
  316. 14:10will be ester bonds. And in case of
  317. 14:13phospholipid, phospholipid is found
  318. 14:15mainly in membrane formation. Right? The
  319. 14:18head would be hydrophilic and the tail
  320. 14:20will be hydrophobic.
  321. 14:21The key concept, hydrophobic regions in
  322. 14:24membrane molecules are frequently
  323. 14:25tested. This the key concept,
  324. 14:27recognition type. Hydrophobic regions
  325. 14:30are the tail and the head is
  326. 14:33hydrophilic. All right? Now, let's go to
  327. 14:36the topic of protein.
  328. 14:39To understand protein, we need to
  329. 14:41understand amino acid.
  330. 14:43So, proteins are made up of so many
  331. 14:46amino acids together.
  332. 14:48How does an amino acid look like?
  333. 14:51It will have a carbon, it will have a
  334. 14:53carboxylic acid. It will also have an
  335. 14:56amino group.
  336. 14:58Then, hydrogen can be there and an alkyl
  337. 15:01group. This is the common formation of
  338. 15:04an amino acid. Amino acids are joining
  339. 15:06together, it will make peptide.
  340. 15:10And the peptide will formed polypeptide.
  341. 15:14And polypeptide
  342. 15:17eventually will form protein molecules.
  343. 15:21Right?
  344. 15:22So,
  345. 15:23we can say from our lecture that
  346. 15:26proteins are built from amino acids
  347. 15:29joined by the peptide bonds. Very
  348. 15:30important, and this reaction is also
  349. 15:33type of condensation
  350. 15:35reaction.
  351. 15:36And proteins has structural levels. One
  352. 15:40is primary, another one is secondary,
  353. 15:43tertiary, and quaternary.
  354. 15:45Sometimes primary can be addressed as
  355. 15:481°, secondary 2°, this is 3°, and this
  356. 15:51is 4°.
  357. 15:53What are the high yield links?
  358. 15:56There are some high links such as active
  359. 15:59site shape, denaturation, and enzyme
  360. 16:02specificity. What do we mean by this? If
  361. 16:06we decrease the pH, then the protein
  362. 16:09will get
  363. 16:10misfolded, and it will lose its
  364. 16:13functionality.
  365. 16:14If we increase the temperature, the
  366. 16:17protein might get coagulated,
  367. 16:19or it can become denatured.
  368. 16:22And also in case of enzyme,
  369. 16:24we must know enzymes are nothing but
  370. 16:28proteins.
  371. 16:29And there is a particular temperature
  372. 16:31range,
  373. 16:33in which range proteins will act
  374. 16:35superiorly and optimally.
  375. 16:38But if we increase the temperature too
  376. 16:40much or decrease it, then the enzyme
  377. 16:43will not work properly. And when we say
  378. 16:46that specificity,
  379. 16:48it means that
  380. 16:50for each chemical reaction, there will
  381. 16:52be a specific enzyme. Enzymes don't work
  382. 16:55in all the reactions. There will be some
  383. 16:57specific reactions reserved for it.
  384. 17:01All right?
  385. 17:02Now, our next topic,
  386. 17:05an exam favorite topic, that is nucleic
  387. 17:08acid.
  388. 17:11And
  389. 17:13if we want to understand nucleic acid,
  390. 17:15then we must know nucleic acid is a
  391. 17:18polymer
  392. 17:20of
  393. 17:24nucleotide.
  394. 17:28All right?
  395. 17:30So,
  396. 17:31in nucleotide, there will be two other
  397. 17:33components. One will be phosphate.
  398. 17:38Another will be nucleoside.
  399. 17:44Nucleoside has base and sugar.
  400. 17:51And the sugar
  401. 17:53that we are talking about in this will
  402. 17:55be
  403. 17:56ribose.
  404. 17:57If the sugar is found in RNA,
  405. 18:01then it will be ribose
  406. 18:05or
  407. 18:06C5H10O5.
  408. 18:11If we want to see the sugar inside DNA,
  409. 18:15then it will become deoxyribose.
  410. 18:18That means it will have one less oxygen
  411. 18:21in its formation.
  412. 18:23So, deoxyribose
  413. 18:26will be written like this.
  414. 18:28Deoxyribose and it will be C5H10O4.
  415. 18:33Very important to remember this formula.
  416. 18:36What about the base? There are two types
  417. 18:38of base. One is purine.
  418. 18:41Another one is pyrimidine.
  419. 18:45The name
  420. 18:47that is larger, their structure will be
  421. 18:49smaller. In case of purine, the name is
  422. 18:52smaller, but their structure is larger.
  423. 18:55Purines are adenine and guanine.
  424. 18:58Pyrimidines are cytosine,
  425. 19:00thymine, uracil.
  426. 19:03Uracil is found in case of RNA.
  427. 19:05And cytosine thymine are found in case
  428. 19:09of DNA.
  429. 19:10And the bases has particular structure.
  430. 19:14Adenine will always attach or pair with
  431. 19:17thymine with two hydrogen bonds between
  432. 19:20them.
  433. 19:21Cytosine
  434. 19:22pairs with guanine with three hydrogen
  435. 19:26bonds.
  436. 19:28Right? And if we are asked about the
  437. 19:30backbone of DNA, we have seen DNA like
  438. 19:33this.
  439. 19:34The backbone of DNA will be formed by
  440. 19:37phosphodiester bonds.
  441. 19:40I met will ask about the percentage base
  442. 19:43composition.
  443. 19:44It will also ask about the counting of
  444. 19:47hydrogen bonds, counting phosphodiester
  445. 19:50bonds,
  446. 19:52and complementary strand sequences.
  447. 19:55These are the scoring questions.
  448. 19:57We will practice each of them when we
  449. 20:00will be practicing our MCQ section.
  450. 20:04Let's review what we have studied in
  451. 20:07nucleic acid section.
  452. 20:10Basic, but this nucleic acid will be
  453. 20:13asked every single year.
  454. 20:15We have already said
  455. 20:16in case of DNA,
  456. 20:18DNA will have deoxyribonucleic acid. It
  457. 20:22will have base pairing.
  458. 20:24And there will be hydrogen bonds between
  459. 20:27the bases, and the backbone will have
  460. 20:29phosphodiester bonds. Right? What are
  461. 20:33the questions that are important?
  462. 20:35The questions are the following.
  463. 20:37There will be some percentage base
  464. 20:39problems, then hydrogen bonds counting
  465. 20:42or phosphodiester bonds. Also,
  466. 20:44complementary strand sequence. We'll
  467. 20:46practice them. You don't need to worry
  468. 20:48about those.
  469. 20:50Then, after completing this section,
  470. 20:53let's move to part three.
  471. 20:55In part three, we will talk about the
  472. 20:57pH.
  473. 20:58Right? pH and buffer.
  474. 21:03What is pH?
  475. 21:06Basically, we mean pH is
  476. 21:09acidity
  477. 21:10or how many hydrogen ions are present in
  478. 21:12a solution. That is the simple concept.
  479. 21:16But when we try to mathematically
  480. 21:17express it,
  481. 21:19pH will be equal to
  482. 21:22minus log
  483. 21:27base 10 of hydrogen ion concentration.
  484. 21:33So, the trap is that pH is logarithmic.
  485. 21:39That means that a change of one pH,
  486. 21:42let's say from two to three,
  487. 21:45means a tenfold change
  488. 21:49in hydrogen ion concentration.
  489. 21:52Right? This is very important.
  490. 21:55An IMAT will test this logic directly.
  491. 21:59And this is the pH that we have
  492. 22:01discussed. After that, buffer.
  493. 22:04So, what is buffer?
  494. 22:06And why is buffer important?
  495. 22:09Because our body's blood circulation
  496. 22:12system has a certain pH and the pH range
  497. 22:15is 7.35
  498. 22:17to 7.45.
  499. 22:19And keeping this range preserved is very
  500. 22:23crucial.
  501. 22:24And keeping this range preserved is very
  502. 22:27crucial for our
  503. 22:29bodily functions. Okay. And how do we
  504. 22:32make sure that the range is preserved?
  505. 22:36Buffer comes into action.
  506. 22:38Buffer is a solution
  507. 22:40in which if you add some base
  508. 22:44or if you add some acid, it will try to
  509. 22:48resist
  510. 22:49the change in pH. But don't you think
  511. 22:53that you can add as many bases or acids
  512. 22:57as possible. You can only add a few
  513. 23:01bases or few acids, all right?
  514. 23:04And what is the formation of buffer?
  515. 23:06Buffer usually has a weak acid
  516. 23:12and its conjugate base.
  517. 23:16All right?
  518. 23:20Let's say a weak acid example can be
  519. 23:22this, CH3COOH.
  520. 23:26This is called acetic acid
  521. 23:29or ethanoic acid. If we remove the
  522. 23:32hydrogen from this compound, then we
  523. 23:34will find its conjugate base and it will
  524. 23:37be CH3COO.
  525. 23:40Right?
  526. 23:41It can also be the opposite. I mean, you
  527. 23:44can also form buffer by a weak base and
  528. 23:47its conjugate acid.
  529. 23:49And why I met cares about this? Because
  530. 23:52enzymes work only in a narrow pH range.
  531. 23:56Right?
  532. 23:58And one famous acid that is present
  533. 24:00inside our body is found in our stomach
  534. 24:03and that is hydrochloric acid.
  535. 24:07On the other hand,
  536. 24:09the small intestine, it doesn't have
  537. 24:11acid. It's rather alkaline.
  538. 24:14Very important to know.
  539. 24:16I met often links buffers with digestion
  540. 24:18and enzyme activity.
  541. 24:21HCL pH is less than seven solution. On
  542. 24:25the other hand, alkaline pH will be
  543. 24:28greater than seven. Right?
  544. 24:30And
  545. 24:32let's cover what we have studied till
  546. 24:34now. We have studied the pH and buffers.
  547. 24:37pH definition
  548. 24:39Actually, this means that pH is
  549. 24:42negative log
  550. 24:45hydrogen ion concentration
  551. 24:48and log to the base 10. And the trap is
  552. 24:51that pH scale is logarithmic.
  553. 24:54pH six has 10 times higher
  554. 24:57proton concentration or hydrogen ion
  555. 25:01concentration than pH 7. That means that
  556. 25:04pH 6 is more acidic than pH 7 or pH 6 is
  557. 25:1010 times more acidic than pH 7.
  558. 25:13We have also talked about the buffers.
  559. 25:15Buffer means buffer is a solution that
  560. 25:17will resist pH change. Usually, buffer
  561. 25:20is formed by weak acid conjugate base.
  562. 25:23We have given an example. Also, it can
  563. 25:25be formed by weak base and conjugate
  564. 25:27acid. If we remember these two rules,
  565. 25:29then we can solve any type of buffer
  566. 25:31solutions or we can identify at least.
  567. 25:34And why I'm at chaos, we have said that
  568. 25:37enzymes have narrow optimum pH ranges.
  569. 25:40Digestion has different pH zones
  570. 25:42such as stomach acid has
  571. 25:45hydrochloric acid. On the other hand,
  572. 25:48small intestine is alkaline. We have
  573. 25:50already covered that as well.
  574. 25:53Okay.
  575. 25:55Our next big topic is enzyme.
  576. 25:59Right? Enzyme is the most tested
  577. 26:02section. That's why enzyme is very very
  578. 26:05important for us.
  579. 26:07What are the functions of enzymes? We
  580. 26:09have already said enzyme is a type of
  581. 26:11protein. But you must remember enzymes
  582. 26:14are not always proteins. Sometimes
  583. 26:16enzymes can have non-protein parts as
  584. 26:19well.
  585. 26:21If an enzyme is formed by protein
  586. 26:26and non-protein, then we will not call
  587. 26:29it enzyme anymore. We will call it
  588. 26:31conjugated
  589. 26:34protein.
  590. 26:36All right?
  591. 26:37And in that case,
  592. 26:39in conjugated protein, the protein part
  593. 26:42will be called apoenzyme.
  594. 26:46And the non-protein part will be called
  595. 26:50prosthetic group.
  596. 26:57If the prosthetic group is any metal
  597. 27:00ion,
  598. 27:01then we will call it cofactor.
  599. 27:05And if the prosthetic group is any
  600. 27:08organic compound,
  601. 27:11we will call it
  602. 27:13coenzyme.
  603. 27:17One important distinction that we need
  604. 27:19to make is that enzyme works in a narrow
  605. 27:22temperature and pH range.
  606. 27:24That means that if you put too much
  607. 27:26temperature on enzyme, it will lose its
  608. 27:29functionality. But coenzymes, they can
  609. 27:32tolerate much heat and it can work in
  610. 27:35high temperatures.
  611. 27:37Right? High temperatures. This is
  612. 27:39important and this can be tested in the
  613. 27:42IMAT.
  614. 27:43Right?
  615. 27:45In other words, we can also say enzymes
  616. 27:48are called biocatalyst.
  617. 27:51Biocatalyst.
  618. 27:53Because enzymes help a reaction to move
  619. 27:57forward. It will help a reaction to move
  620. 28:00forward, but it doesn't participate in
  621. 28:03any reaction directly. And how does
  622. 28:06enzyme help a reaction move forward?
  623. 28:09Enzyme will decrease the activation
  624. 28:11energy. Right? This is very important.
  625. 28:15Enzyme will decrease the activation
  626. 28:18energy. What is activation energy?
  627. 28:20Let's say this is a reactant and it
  628. 28:23wants to become product.
  629. 28:25So,
  630. 28:27to
  631. 28:29complete this reaction, we must have a
  632. 28:32particular activation energy.
  633. 28:35But when we add the enzyme in this
  634. 28:38reaction, the activation energy
  635. 28:41or EA will decrease and the reaction
  636. 28:44will easily occur.
  637. 28:46And this is very high yield when it
  638. 28:48comes to the function of enzymes. They
  639. 28:52are not consumed in the reaction,
  640. 28:55right? And they increase the reaction
  641. 28:57rate by lowering activation energy. And
  642. 29:00what about the temperature and pH
  643. 29:02effects
  644. 29:03on enzyme?
  645. 29:05Let's explain the logic step by step.
  646. 29:08Let's say the temperature is increasing.
  647. 29:11If the temperature increases,
  648. 29:13then the molecules inside a compound, it
  649. 29:17will increase its kinetic energy. And if
  650. 29:20the kinetic energy increases, the
  651. 29:22collision between the atoms, the
  652. 29:24molecules will increase as well.
  653. 29:26And as a result, the rate of reaction,
  654. 29:29let's say the rate of reaction will also
  655. 29:31increase.
  656. 29:32But remember, there will be an optimum
  657. 29:35temperature. If you go beyond optimum
  658. 29:38temperature, then enzyme will denature
  659. 29:41and active site shape changes.
  660. 29:44Activity rapid to decreases. What do we
  661. 29:46mean by the active site? Let's say this
  662. 29:49is an enzyme.
  663. 29:50Enzyme has an active site, and
  664. 29:53let's say this is the active site, AS.
  665. 29:56This active site will bind with
  666. 29:58substrate. The substrate means reactant.
  667. 30:01Let's say with black block we mean a
  668. 30:05substrate. If the active site gets
  669. 30:08deactivated, then it will not
  670. 30:10participate in any reaction.
  671. 30:13And now talk about pH.
  672. 30:16If we change the pH, then the ionization
  673. 30:19of amino acid chain will also change.
  674. 30:22And this will alter the bonding. Let's
  675. 30:24say
  676. 30:25amino acid is bonding with another amino
  677. 30:28acid.
  678. 30:29If we change the pH,
  679. 30:31this will alter the bonding, and the
  680. 30:33change of shape of the active site will
  681. 30:36be also present in this.
  682. 30:38This sentence alone answers many IMAT
  683. 30:41questions.
  684. 30:42The final part about
  685. 30:45enzyme is competitive and
  686. 30:48non-competitive inhibition.
  687. 30:51Competitive
  688. 30:53versus non-competitive
  689. 30:56inhibition. So,
  690. 30:58say slowly and clearly, what is
  691. 31:00competitive inhibition? The inhibitor
  692. 31:02competes with the substrate for the
  693. 31:04active site.
  694. 31:06And in case of competitive inhibition,
  695. 31:09increasing the substrate
  696. 31:13can reduce the inhibition.
  697. 31:16In case of competitive inhibition, let's
  698. 31:18say you have substrate, I mean reactant,
  699. 31:20let's say A and B, and it is making C
  700. 31:23and D. These two will be called
  701. 31:25substrate. If you increase the substrate
  702. 31:27concentration, then the inhibition will
  703. 31:30be reduced gradually. That means that if
  704. 31:34in case of competitive inhibition, if
  705. 31:37you increase the substrate
  706. 31:39concentration, eventually there will be
  707. 31:41reduction in
  708. 31:43the inhibition.
  709. 31:45And what about non-competitive?
  710. 31:48In case of non-competitive inhibition,
  711. 31:50the inhibitor
  712. 31:52will bind to an allosteric site.
  713. 31:55In case of non-competitive inhibition,
  714. 31:58you might increase the substrate
  715. 32:00concentration, but the inhibition cannot
  716. 32:03be overcome.
  717. 32:04And I met
  718. 32:06will ask you this question as if it's
  719. 32:08your second nature.
  720. 32:10So, we have covered so many things about
  721. 32:12enzyme. Let's review them one by one.
  722. 32:16And we have said what enzymes do.
  723. 32:19Enzymes are biocatalyst.
  724. 32:21They will increase the reaction rate.
  725. 32:23Remember, they will not decrease. They
  726. 32:25will only increase the reaction rate.
  727. 32:27How? By lowering activation energy.
  728. 32:30And after the reaction is complete, the
  729. 32:33enzymes will not be consumed.
  730. 32:36And what are the effects of temperature
  731. 32:37and pH effects? I met with love crafts.
  732. 32:40We will
  733. 32:42solve it and optimum pH temperature
  734. 32:44interpretation. And I met will also test
  735. 32:47the kind of data reasoning. So, what is
  736. 32:49the key logic that we need to review? If
  737. 32:51we increase the temperature, the kinetic
  738. 32:54energy will increase and the collision
  739. 32:56frequency will also increase up until
  740. 32:59the optimum temperature, right?
  741. 33:02If we increase the temperature beyond
  742. 33:04the optimum temperature, enzyme will
  743. 33:07lose its active site and pH changes
  744. 33:10ionization of amino acid, that's why
  745. 33:12there will be an optimum pH, too.
  746. 33:14We have covered the competitive versus
  747. 33:16non-competitive inhibition. In case of
  748. 33:19non-competitive,
  749. 33:21let's cover the non-competitive first.
  750. 33:23If you increase the concentration of the
  751. 33:26substrate, you will not be able to
  752. 33:29increase the rate of reaction or you
  753. 33:32will not be able to reduce the
  754. 33:35inhibition. But, competitive inhibition
  755. 33:38gives you that opportunity. If you
  756. 33:40increase the substrate concentration,
  757. 33:42then the inhibition effect can be
  758. 33:45controlled or reduced.
  759. 33:47So, we have covered basic topics now and
  760. 33:50we need to solve some questions.
  761. 33:53The first question that we are seeing, I
  762. 33:56will give you 15 seconds.
  763. 33:58The question is,
  764. 34:00which property of water is most
  765. 34:02important when heat is lost from human
  766. 34:05skin during sweating?
  767. 34:09Pause the video, attempt the question,
  768. 34:11then come back for solutions.
  769. 34:14Okay, we have given you the time.
  770. 34:17Okay, now let's solve the question. We
  771. 34:19have said that
  772. 34:21there is a property called latent heat
  773. 34:25of vaporization.
  774. 34:27That means water will absorb some
  775. 34:29temperature or heat before it changes
  776. 34:33its physical state. Heat that water can
  777. 34:37hold
  778. 34:39that heat is called latent heat. And
  779. 34:42that's why the answer would be latent
  780. 34:43heat of vaporization.
  781. 34:46Okay, the next question.
  782. 34:48The question states a polysaccharide is
  783. 34:50made by joining five glucose monomers.
  784. 34:53What is its chemical formula? The
  785. 34:55options will look like this. C6
  786. 34:58H12 O6
  787. 35:00then C30 H52 O26
  788. 35:05Let's put the third option C30 H60 O40
  789. 35:11then C5 H60 O5. The final one is
  790. 35:16CH then N-1
  791. 35:20O
  792. 35:21then put a bracket
  793. 35:24and two another bracket.
  794. 35:27How to solve this?
  795. 35:29We need to remember when one glucose
  796. 35:32monomer
  797. 35:34attaches with another monomer we will
  798. 35:37lose one water
  799. 35:39molecule. But we see that five glucose
  800. 35:42monomers are attaching here. That's why
  801. 35:45we will subtract four water molecules.
  802. 35:49We need to keep it in mind. Now, let's
  803. 35:52write the formula of glucose that will
  804. 35:54be C6 H12
  805. 35:57O6
  806. 35:59multiply it with five. That would give
  807. 36:01us C30
  808. 36:04then H60 and O
  809. 36:0830.
  810. 36:09Remember we need to subtract four water
  811. 36:11molecules. We will subtract it. It will
  812. 36:14be like 4 H2O.
  813. 36:16And it will give us if we count it
  814. 36:19properly then C30 H52
  815. 36:23and O26.
  816. 36:26That's why our answer would be option B.
  817. 36:30Now let's go with question three.
  818. 36:32We see that there is a sequence of C C G
  819. 36:36T T A T T G A and the sequence is found
  820. 36:40on one strand of deoxyribonucleic acid
  821. 36:42helix. Which sequence is on the
  822. 36:45complementary strand? To solve this
  823. 36:47question, we must remember C will
  824. 36:51have bond with G and A will have bond
  825. 36:54with T. So let's write under C we will
  826. 36:58write G another G C
  827. 37:01then A another A another T then two more
  828. 37:07A's
  829. 37:10and C and T. Let's see where we can find
  830. 37:14this option. We see that we found this
  831. 37:16option in option A. That is G G C A A T
  832. 37:22A A C T. Let's move to the next
  833. 37:23question.
  834. 37:25We remember that in case of competitive
  835. 37:28inhibition
  836. 37:29if you increase the substrate
  837. 37:31concentration, then you can reduce
  838. 37:34the inhibition. So keeping that in mind,
  839. 37:37we need to read five of the options.
  840. 37:41The option one or option A has competes
  841. 37:44with substrate for the active site.
  842. 37:47Is that true?
  843. 37:49Yes, this is true. In competitive
  844. 37:52inhibition, the inhibitor will have
  845. 37:54competition with the substrate for
  846. 37:56active site. We need to remind you the
  847. 37:58active site means the place of the
  848. 38:00substrate where
  849. 38:02the enzyme will get attached. Another
  850. 38:05term is allosteric site. In case of
  851. 38:08allosteric site, there will be another
  852. 38:11regulatory protein or controller
  853. 38:13molecule that can change the shape of
  854. 38:16the active site of an enzyme. All right?
  855. 38:19Don't get confused between active site
  856. 38:21and allosteric site. As we have gotten
  857. 38:24option A as our correct answer, we will
  858. 38:26not look for the other options.
  859. 38:29Even after that, I can explain why the
  860. 38:32other options are not correct. In option
  861. 38:34B, we see that
  862. 38:36it is said that the inhibitor will bind
  863. 38:39to substrate. No, this is not true. This
  864. 38:42is false. It will not bind to the
  865. 38:44substrate.
  866. 38:45And option C, the inhibitor binds to
  867. 38:48allosteric site. No.
  868. 38:52And
  869. 38:53the other options are not correct as
  870. 38:55well.
  871. 38:56Now, let's move to question five.
  872. 38:59What does option five say?
  873. 39:02Option five says that when investigating
  874. 39:05enzyme activity, enzyme P has optimum pH
  875. 39:08of 4.5 and enzyme Q has optimum pH of
  876. 39:129.5. Which statement must be correct?
  877. 39:15Okay.
  878. 39:16Option A says that both enzymes have the
  879. 39:19same optimum temperature. Is that true?
  880. 39:22No.
  881. 39:23Because they have different optimum pH,
  882. 39:26they will not have the same optimum
  883. 39:28temperature. What about option B? Enzyme
  884. 39:31P is denatured at pH 4.5. No.
  885. 39:36It is not denatured. Enzyme P will show
  886. 39:40maximum activity in case of pH 4.5. What
  887. 39:44about option C? Enzyme Q is more active
  888. 39:46in acidic conditions.
  889. 39:48Enzyme Q has optimum pH of 9.5, which is
  890. 39:52an alkaline pH. That's why this is not
  891. 39:55correct as well. What about option D?
  892. 39:58Option D says changing pH changes
  893. 40:01ionization of amino acid side chains and
  894. 40:04can alter the active site. This is true.
  895. 40:06We have already said. And what about
  896. 40:08option E? pH doesn't affect enzyme
  897. 40:10activity. Not true. pH can significantly
  898. 40:13affect enzyme activity. That's why our
  899. 40:15answer would be D.
  900. 40:17Now, our next part
  901. 40:19is full of solutions.
  902. 40:22I will give you some mini homeworks
  903. 40:25from the papers. Practice the patterns.
  904. 40:28Practice the deoxyribonucleic acid base
  905. 40:30percentage, hydrogen bonds,
  906. 40:33phosphodiester bonds counting, and also
  907. 40:35enzyme pH and temperature graph
  908. 40:37interpretation. If you like my lecture,
  909. 40:40please do
  910. 40:42put a like and subscribe. And if you
  911. 40:44want to buy my bundle, I have
  912. 40:47a PDF. Thank you. See you in the next
  913. 40:50lecture.

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